Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006735.1 Corchorus capsularis cultivar CVL-1 contig06756, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68880

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5275--5342
33
2.1
33
83
2
84
35
25
23
16
1.95
5242--5342
32
3.1
32
78
1
103
34
25
21
17
1.96
5889--5932
23
1.9
23
100
0
88
13
38
18
29
1.89
5978--6014
11
3.0
13
84
15
60
0
40
0
59
0.97
8715--8740
2
13.0
2
100
0
52
50
0
0
50
1.00
8926--8988
32
2.0
32
90
0
99
33
25
22
19
1.97
12456--12495
21
2.0
20
90
5
62
20
30
15
35
1.93
14944--15066
61
2.0
61
91
0
201
21
14
13
50
1.77
16190--16219
3
10.0
3
92
0
51
0
36
0
63
0.95
16312--16367
22
2.5
22
77
11
60
5
28
3
62
1.34
17010--17045
19
1.9
18
88
5
54
41
2
22
33
1.68
22278--22311
11
3.2
10
84
15
50
29
2
17
50
1.61
24033--24099
34
1.9
35
81
3
82
35
10
2
50
1.52
29094--29127
11
3.2
10
84
15
50
29
2
17
50
1.61
34891--35284
75
5.2
75
86
2
531
22
35
28
13
1.92
34893--35284
151
2.6
150
87
2
536
22
35
28
13
1.92
43560--43590
9
3.4
9
100
0
62
48
9
9
32
1.69
45585--45645
31
1.9
31
83
6
77
19
8
18
54
1.68
52623--52652
11
2.7
11
94
0
51
40
20
0
40
1.52
53931--53959
15
2.0
15
93
6
51
0
62
0
37
0.96
55062--55104
21
2.1
21
82
4
52
60
18
6
13
1.55
57200--57243
22
2.0
23
90
4
72
43
6
11
38
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58890--58919
11
2.7
11
94
0
51
40
20
0
40
1.52
60167--60221
24
2.3
24
96
0
101
16
49
20
14
1.80
63502--63541
18
2.2
18
86
4
53
45
5
20
30
1.72
68376--68400
12
2.1
12
100
0
50
44
16
40
0
1.47
68354--68435
39
2.1
39
84
4
103
48
13
28
9
1.74

Tables:   1

The End!