Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006736.1 Corchorus capsularis cultivar CVL-1 contig06757, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86307

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1498--1602
26
4.0
26
76
11
108
53
8
20
18
1.70
1503--1603
53
1.9
53
87
4
150
54
7
19
17
1.67
1713--1804
22
4.2
22
75
10
91
52
6
20
20
1.69
1655--1746
29
3.1
29
73
6
87
46
6
25
21
1.75
1713--1970
43
6.1
43
75
15
236
53
6
20
19
1.67
1714--2017
65
4.7
66
71
19
221
53
6
20
19
1.67
1817--1970
22
7.1
23
79
10
139
53
6
20
19
1.66
1635--1890
101
2.5
101
85
6
329
50
7
22
20
1.72
1929--1999
30
2.4
30
84
11
85
60
2
16
19
1.48
1914--2017
52
2.0
52
84
3
138
57
4
17
20
1.57
1967--2008
22
1.9
22
85
0
57
57
4
16
21
1.58
6269--6297
3
10.0
3
92
7
51
0
34
0
65
0.93
20184--20237
25
2.2
25
87
6
76
61
16
9
12
1.56
32847--32873
2
13.5
2
100
0
54
48
0
0
51
1.00
40040--40076
19
1.9
19
89
10
58
5
27
35
32
1.79
49567--49609
20
2.2
20
91
0
68
37
4
13
44
1.65
50748--50789
2
21.5
2
90
4
50
57
0
0
42
0.99
50752--50795
14
3.1
14
83
6
52
63
0
0
36
0.95
50764--50797
15
2.1
17
89
10
54
67
0
0
32
0.91
50710--50845
65
2.1
67
91
5
224
54
4
3
37
1.38
50813--50842
2
15.5
2
93
6
53
50
0
0
50
1.00
51255--51288
6
5.7
6
92
0
59
2
17
0
79
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51838--51885
2
25.5
2
83
12
66
50
0
0
50
1.00
51846--51893
14
3.3
15
80
14
64
47
0
2
50
1.12
57703--57740
19
2.0
19
100
0
76
42
10
0
47
1.38
62709--62760
10
4.8
10
75
15
50
17
26
46
9
1.79
62709--62757
23
2.2
21
85
7
62
18
26
44
10
1.81
62945--63000
23
2.4
23
100
0
112
12
23
50
14
1.77
67022--67121
33
3.1
32
85
4
119
10
28
40
22
1.86
68086--68154
36
1.9
36
88
5
104
53
4
8
33
1.51
71227--71269
21
2.0
21
82
8
52
27
4
23
44
1.73
72316--72344
13
2.1
14
93
6
51
20
20
10
48
1.79
74079--74191
52
2.2
53
85
4
149
46
23
14
16
1.83
74098--74193
27
3.7
26
78
8
106
47
22
13
15
1.80
74428--74516
44
2.0
44
84
2
117
33
19
22
24
1.97
74525--74661
50
2.7
50
97
0
256
33
13
17
35
1.88
75071--75143
32
2.3
32
92
0
119
13
9
38
38
1.78
75090--75140
16
3.3
15
78
10
66
15
9
39
35
1.81
75086--75157
32
2.2
32
90
0
108
13
9
36
40
1.78
75303--75406
16
6.5
16
80
0
127
3
9
32
53
1.51
75303--75406
32
3.2
32
88
0
163
3
9
32
53
1.51
77961--78005
14
3.3
14
87
12
67
33
15
6
44
1.73
77959--78017
14
4.5
12
82
14
55
35
11
8
44
1.72
80937--80993
27
2.1
28
96
3
107
17
22
3
56
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80892--81089
41
4.6
41
74
12
148
15
23
5
55
1.60
80941--80988
14
3.5
13
75
8
51
16
25
2
56
1.51
81011--81072
7
8.7
7
76
3
61
14
22
0
62
1.31
81011--81106
22
4.5
21
79
6
68
17
19
1
61
1.41
81045--81263
22
10.2
21
79
8
228
22
19
3
54
1.60
81281--81329
15
3.2
15
77
13
55
28
18
4
48
1.66
81724--81844
34
3.5
34
72
18
122
28
14
8
48
1.73
81712--81846
71
1.9
71
93
0
234
28
14
8
48
1.72
81822--82074
55
4.6
55
93
0
425
26
18
7
47
1.76
83550--83585
19
1.9
18
88
5
54
33
22
2
41
1.68

Tables:   1

The End!