Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006740.1 Corchorus capsularis cultivar CVL-1 contig06761, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25591

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
183--241
25
2.4
25
88
5
86
40
3
13
42
1.61
252--294
22
2.0
22
90
0
68
32
9
16
41
1.80
387--443
22
2.6
22
80
5
62
36
10
15
36
1.82
410--473
22
2.9
22
85
0
74
46
6
15
31
1.71
1052--1109
27
2.1
27
96
0
107
8
25
8
56
1.58
5297--5349
2
27.5
2
81
7
65
52
0
1
45
1.11
5651--5679
13
2.2
13
100
0
58
20
6
0
72
1.07
6936--6997
2
33.5
2
73
15
53
53
0
4
41
1.22
6940--6997
11
5.7
11
73
17
54
53
0
5
41
1.23
7290--7428
21
6.5
22
70
16
78
34
12
10
42
1.77
7465--7560
22
4.4
22
71
15
72
39
17
7
35
1.78
7680--7811
22
6.0
22
83
5
151
35
18
12
33
1.88
8235--8308
31
2.4
31
81
2
85
52
4
13
29
1.58
8426--8472
11
4.5
11
81
7
53
80
0
2
17
0.80
9520--9554
16
2.2
16
90
5
54
65
0
0
34
0.93
9424--9683
129
2.0
129
100
0
520
40
3
16
39
1.67
9649--9685
16
2.4
16
86
4
58
62
0
0
37
0.96
9718--9779
31
2.0
31
90
0
97
43
8
19
29
1.79
13497--13605
55
2.0
56
81
1
130
23
17
31
27
1.97
14130--14181
26
2.0
26
100
0
104
46
3
3
46
1.39
16091--16131
22
1.9
21
85
5
55
82
0
12
4
0.81
16644--16687
18
2.5
17
82
10
52
70
20
4
4
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16643--16686
19
2.4
18
84
3
52
72
18
4
4
1.19
16776--16842
25
2.7
25
88
4
91
56
5
34
2
1.39
21071--21097
13
2.1
13
100
0
54
44
14
0
40
1.46
23558--23627
35
2.0
35
86
5
97
47
27
11
14
1.78

Tables:   1

The End!