Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006742.1 Corchorus capsularis cultivar CVL-1 contig06763, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12339

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
539--577
18
2.1
18
85
4
51
43
2
20
33
1.65
1539--1693
11
13.9
11
84
2
184
56
9
20
13
1.64
1547--1828
22
12.8
22
80
3
208
51
10
18
19
1.75
1547--1828
33
8.5
33
77
6
187
51
10
18
19
1.75
1547--1818
11
24.6
11
78
0
157
51
10
18
19
1.75
1560--1828
55
4.9
55
80
4
249
50
10
18
20
1.75
1821--2223
36
11.7
35
81
10
422
40
10
23
25
1.86
1821--2223
71
5.8
69
82
10
432
40
10
23
25
1.86
1962--2011
26
1.9
26
95
0
91
38
12
22
28
1.89
1994--2223
107
2.2
107
85
2
311
41
10
23
23
1.86
2035--2252
107
2.0
107
79
3
233
42
9
23
24
1.83
2223--2324
36
3.0
34
82
12
95
45
5
21
27
1.75
2238--2324
36
2.4
35
86
5
120
44
6
19
28
1.76
4730--4802
29
2.4
31
80
11
80
41
28
10
19
1.85
11720--11770
3
17.0
3
91
0
84
31
1
1
64
1.15
12284--12336
2
26.5
2
100
0
106
50
0
49
0
1.00

Tables:   1

The End!