genome.fa.s6743.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006743.1 Corchorus capsularis cultivar CVL-1 contig06764, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159678

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2464--2502	20	2.0	20	94	0	69	56	5	0	38	1.22
4446--4890	168	2.7	166	87	3	608	40	16	14	28	1.88
5405--5493	45	2.0	45	93	0	151	25	20	20	33	1.97
8544--8568	13	1.9	13	100	0	50	40	0	12	48	1.40
8927--9407	165	2.9	164	85	3	667	29	15	17	37	1.90
9573--9606	17	2.0	17	100	0	68	41	0	11	47	1.40
10002--10078	22	3.6	21	78	5	73	41	11	9	37	1.73
14149--14840	35	20.0	34	81	10	685	32	21	9	36	1.86
14149--14798	71	9.3	70	83	8	688	32	20	9	36	1.86
14149--14796	177	3.7	176	88	6	905	33	20	9	36	1.86
24670--24722	29	1.9	26	100	0	79	41	18	9	30	1.82
25004--25280	31	9.1	30	69	20	132	30	18	9	41	1.83
25038--25312	31	8.5	33	70	18	188	30	17	9	42	1.81
25038--25179	65	2.1	68	81	11	159	30	16	9	42	1.80
24994--25305	156	2.0	157	94	0	545	29	18	9	41	1.83
37890--37923	11	3.2	10	84	15	50	50	17	2	29	1.61
38076--38116	20	2.0	21	85	4	57	63	4	9	21	1.44
44757--44790	11	3.2	10	84	15	50	50	17	2	29	1.61
44943--44984	20	2.0	21	86	4	59	61	4	11	21	1.48
46579--46677	45	2.2	44	81	8	112	26	41	21	11	1.86
50518--50542	11	2.3	11	100	0	50	76	0	16	8	1.02
50695--50800	40	2.7	40	88	2	151	48	9	16	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53394--53438	14	3.2	13	84	9	54	46	6	13	33	1.69
54697--54742	20	2.2	21	85	11	60	47	6	10	34	1.64
59167--59262	30	3.1	30	80	11	113	22	39	27	10	1.87
59180--59246	33	2.0	33	91	0	107	23	38	25	11	1.89
62209--62335	64	2.0	64	84	3	166	33	13	25	26	1.93
62591--62839	85	2.9	84	77	10	256	37	12	24	25	1.91
62885--62968	36	2.4	36	84	7	93	40	10	22	26	1.86
62980--63054	36	2.1	36	92	0	123	36	9	25	29	1.87
62980--63065	36	2.4	36	88	3	111	37	9	25	27	1.87
62828--63421	97	6.2	97	88	3	835	37	11	24	27	1.89
63077--63151	36	2.1	36	87	0	105	36	6	26	30	1.82
63271--63345	36	2.1	36	89	0	114	38	8	22	30	1.83
63316--63513	62	3.3	61	81	3	240	36	13	25	25	1.92
63589--63696	56	1.9	56	86	3	155	27	16	15	39	1.89
63925--63988	26	2.4	27	86	2	85	18	15	26	39	1.91
65704--65740	19	1.9	19	100	0	74	27	10	16	45	1.80
69685--69791	40	2.6	41	85	4	146	48	9	14	28	1.74
71748--71860	39	2.8	40	82	4	138	50	9	14	25	1.73
73780--73826	21	2.2	22	78	17	55	34	10	12	42	1.78
73910--73942	15	2.3	15	89	5	50	21	3	3	72	1.11
75070--75098	6	5.0	6	95	4	51	51	13	0	34	1.42
80456--80486	15	2.1	15	93	0	53	29	9	19	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81783--81897	58	2.0	59	96	1	214	46	6	11	35	1.67
82191--82219	6	5.0	6	95	4	51	51	13	0	34	1.42
86622--86732	12	10.1	11	71	25	60	1	19	0	78	0.84
86621--86728	18	6.2	17	70	25	59	1	19	0	78	0.84
86634--86730	14	6.9	14	74	15	69	2	18	0	79	0.83
86620--86732	38	2.9	39	83	9	133	1	19	0	78	0.83
86696--86729	6	5.8	6	86	6	52	0	17	0	82	0.67
86783--86941	48	3.3	48	92	3	257	34	18	23	22	1.96
88266--88351	33	2.6	33	92	0	145	44	17	8	30	1.78
88367--88471	33	3.2	32	79	2	120	45	19	10	24	1.81
91153--91339	47	4.0	47	89	0	284	33	17	24	24	1.96
91153--91339	94	2.0	95	93	1	322	33	17	24	24	1.96
91451--91954	70	7.3	70	81	6	535	26	18	27	26	1.98
91451--91954	139	3.6	138	87	4	653	26	18	27	26	1.98
92096--92154	32	1.9	30	83	13	75	11	18	13	55	1.68
92416--92512	50	1.9	50	91	0	158	34	15	16	34	1.90
92784--92845	11	5.9	11	75	17	53	3	20	0	75	0.94
93976--94102	44	2.9	44	92	1	218	38	18	7	35	1.79
94565--94715	74	2.0	75	83	3	189	31	21	10	37	1.87
99695--99743	21	2.3	21	80	16	57	32	14	12	40	1.83
101319--101389	6	12.3	6	73	21	55	32	46	19	1	1.59
102167--102255	16	5.6	16	86	6	128	42	39	13	4	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107301--107359	25	2.4	25	91	5	95	38	0	25	35	1.56
107430--107470	21	2.0	21	90	0	64	29	7	43	19	1.78
118297--118335	20	2.0	20	89	0	60	46	5	2	46	1.38
118949--119093	37	3.9	37	90	7	206	28	23	9	38	1.86
119035--119143	32	3.2	32	78	13	105	29	20	10	40	1.85
119118--119305	37	5.2	37	77	12	203	25	25	7	42	1.80
119081--119304	69	3.2	71	78	15	209	25	24	8	41	1.82
119407--119658	41	6.1	41	89	6	377	23	22	9	44	1.82
119426--119685	41	6.4	39	85	8	252	22	22	8	46	1.79
119407--119658	82	3.1	82	94	1	425	23	22	9	44	1.82
119653--119767	37	3.1	36	86	3	151	26	20	10	43	1.83
119710--119822	55	2.1	55	88	3	165	28	20	8	42	1.82
119653--119896	129	1.9	128	88	2	373	26	19	10	43	1.83
119765--120155	37	10.8	37	86	5	471	25	17	10	46	1.80
119673--119848	92	1.9	92	85	2	246	25	19	10	44	1.83
119765--120152	111	3.6	111	88	4	528	25	18	10	46	1.80
120060--120117	28	2.1	28	90	0	89	24	18	5	51	1.66
120163--120307	43	3.5	43	87	7	169	26	13	10	49	1.74
120288--120395	31	3.2	31	64	25	74	26	21	7	44	1.78
120269--120466	71	2.8	71	93	1	344	24	20	8	46	1.78
120307--120435	40	3.4	40	66	26	100	23	22	8	45	1.79
137628--137670	11	3.9	11	90	0	68	46	6	4	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137624--137670	22	2.1	22	96	0	85	46	6	4	42	1.48
153776--153847	29	2.4	29	81	2	81	38	26	11	23	1.88
157812--157947	72	1.9	72	84	3	184	26	5	24	43	1.77
157811--157962	72	2.1	72	81	4	182	24	5	25	44	1.76
159306--159350	21	2.1	22	83	4	56	20	33	6	40	1.78
159524--159603	33	2.4	32	80	10	81	15	32	42	10	1.79
159611--159673	33	1.9	33	87	6	92	9	39	38	12	1.76

Tables:   1

The End!