Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006745.1 Corchorus capsularis cultivar CVL-1 contig06766, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45442

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
247--276
14
2.1
14
93
0
51
66
0
0
33
0.92
2528--2585
29
2.0
30
86
3
82
43
8
0
48
1.34
3089--3129
2
21.0
2
90
5
66
48
2
0
48
1.14
5150--5175
13
2.0
13
100
0
52
15
15
15
53
1.73
13599--13661
31
2.0
31
100
0
126
28
22
23
25
1.99
14313--14814
157
3.2
157
81
4
552
36
17
23
22
1.94
14610--14948
97
3.4
99
85
4
409
35
17
23
22
1.95
14767--14845
39
2.0
39
85
0
104
34
22
26
16
1.95
14873--14955
41
2.0
40
88
2
121
32
19
22
25
1.97
16223--16258
19
1.9
19
88
5
56
47
19
11
22
1.80
17673--17734
28
2.3
27
83
10
81
41
25
14
17
1.88
19227--19571
72
4.8
72
87
0
494
33
16
27
22
1.96
26547--26629
30
2.8
30
82
12
93
49
15
6
28
1.68
35700--35741
17
2.3
18
84
8
50
11
28
2
57
1.47
41021--41067
22
2.2
22
88
11
71
63
8
14
12
1.50

Tables:   1

The End!