genome.fa.s6746.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006746.1 Corchorus capsularis cultivar CVL-1 contig06767, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33959

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8543--8600	19	3.1	19	70	9	64	20	15	3	60	1.49
8539--8651	38	3.1	37	81	12	153	25	15	5	53	1.62
8493--8633	33	4.2	33	72	15	128	24	14	5	55	1.61
8543--8648	33	3.1	33	73	12	97	23	16	3	56	1.56
8636--8873	36	6.7	36	81	11	201	23	19	9	47	1.79
8636--8860	106	2.1	107	85	8	298	24	19	9	47	1.79
8636--8873	70	3.3	70	82	5	266	23	19	9	47	1.79
8779--8877	35	2.6	39	87	7	125	24	19	9	47	1.78
8951--9131	35	5.2	35	92	4	287	26	11	12	49	1.74
9017--9115	20	5.4	20	63	33	62	27	11	10	51	1.69
9113--9196	41	2.0	41	88	4	125	19	22	11	46	1.82
9204--9315	40	3.1	35	79	14	138	26	21	7	44	1.78
9149--9315	73	2.2	74	84	3	210	25	22	7	44	1.79
9370--9537	71	2.4	71	81	6	180	27	17	12	42	1.86
9489--9588	41	2.4	41	88	0	146	26	17	15	42	1.88
13595--13978	44	8.8	44	88	2	569	30	22	23	23	1.99
13988--14339	76	4.6	77	78	5	367	26	20	21	32	1.97
13991--14307	152	2.1	153	86	3	444	26	20	20	32	1.97
13991--14329	38	8.9	38	78	7	314	26	20	20	32	1.97
27759--27816	19	3.1	19	68	9	55	22	15	5	56	1.58
27707--27882	33	5.2	33	78	9	176	26	14	6	53	1.64
27707--27900	104	1.9	102	86	4	273	26	14	6	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27885--28158	36	7.7	36	85	8	337	24	21	9	44	1.81
28030--28141	40	3.0	39	83	8	126	25	21	7	46	1.76
28246--28451	35	5.9	35	93	2	337	28	11	11	49	1.72
28302--28435	20	7.4	20	62	33	72	27	11	9	50	1.70
28433--28516	41	2.0	41	86	4	116	20	22	11	45	1.83
28469--28635	73	2.2	75	85	3	212	25	22	7	44	1.79
28511--28635	40	3.5	35	78	13	130	27	21	7	44	1.78
28809--28908	41	2.4	41	84	0	128	26	18	14	42	1.87

Tables:   1

The End!