Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006747.1 Corchorus capsularis cultivar CVL-1 contig06768, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17105
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Found at i:16 original size:5 final size:6
Alignment explanation
Indices: 1--45 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
*
1 AAAAAG AAAAAC -AAAAC -AAAAC AAAAAC AAAAAC AAAAAC AAAAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAA
46 AGGAAAAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
5 10 0.27
6 27 0.73
ACGTcount: A:0.84, C:0.13, G:0.02, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:6227 original size:41 final size:41
Alignment explanation
Indices: 6182--6264 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
6172 GATCGATGCA
*
6182 TGAGTAAATT-ATTGATACTTACTGAGGATTTTTCTTATTTC
1 TGAGTAAATTGA-TGATACTTACTGAGGAATTTTCTTATTTC
*
6223 TGAGTAAATTGATGATACTTACTGAGTAATTTTCTTATTTC
1 TGAGTAAATTGATGATACTTACTGAGGAATTTTCTTATTTC
6264 T
1 T
6265 CATGATGTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
41 38 0.97
42 1 0.03
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (41 bp):
TGAGTAAATTGATGATACTTACTGAGGAATTTTCTTATTTC
Found at i:6462 original size:277 final size:278
Alignment explanation
Indices: 5967--6489 Score: 951
Period size: 277 Copynumber: 1.9 Consensus size: 278
5957 AGGTGATGAG
5967 TGAGTAACTTTCTTATTTCTCATGATGTAAGTTAAATTGATCTCTTGATTATATATCATGGTGAG
1 TGAGTAACTTTCTTATTTCTCATGATGTAAGTTAAATTGATCTCTTGATTATATATCATGGTGAG
6032 ACTATTTATGGGTTAGTATCGAATCAATTTGAGTTATATATCTTGTTCTTAGTTTATTCCTATAG
66 ACTATTTATGGGTTAGTATCGAATCAATTTGAGTTATATATCTTGTTCTTAGTTTATTCCTATAG
*
6097 AAAAATATGAATCCTGGTAAGTTGATTGTTTATCTATATCAAGTTTGCTTTCTATTAGATCTTTA
131 AAAAATATGAATCCTGGCAAGTTGATTGTTTATCTATATCAAGTTTGCTTTCTATTAGATCTTTA
6162 TTGATTTGTAGATCGATGCATGAGTAAATT-ATTGATACTTACTGAGGATTTTTCTTATTTCTGA
196 TTGATTTGTAGATCGATGCATGAGTAAATTGA-TGATACTTACTGAGGATTTTTCTTATTTCTGA
6226 GTAAATTGATGATACTTAC
260 GTAAATTGATGATACTTAC
* *
6245 TGAGTAATTTTCTTATTTCTCATGATGTAAGTTACATTGATCTCTTGATTATATATCATGGTGAG
1 TGAGTAACTTTCTTATTTCTCATGATGTAAGTTAAATTGATCTCTTGATTATATATCATGGTGAG
6310 ACTATTTATGGGTTAGTATCGAATCAATTTGAGTTATA-ATCTTGTTCTTAGTTTATTCCTATAG
66 ACTATTTATGGGTTAGTATCGAATCAATTTGAGTTATATATCTTGTTCTTAGTTTATTCCTATAG
* * * *
6374 AAAAGTATGAATCCTGGCCAGTTGATTGTTTATCTATATGAAGTTTGCTTTCTATTAGATTTTTA
131 AAAAATATGAATCCTGGCAAGTTGATTGTTTATCTATATCAAGTTTGCTTTCTATTAGATCTTTA
*
6439 TTGATTTGTAGGTCGATGCATGAGTAAATTGATGATACTTACTGAGGATTT
196 TTGATTTGTAGATCGATGCATGAGTAAATTGATGATACTTACTGAGGATTT
6490 GATTGCTTAG
Statistics
Matches: 236, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
277 134 0.57
278 102 0.43
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (278 bp):
TGAGTAACTTTCTTATTTCTCATGATGTAAGTTAAATTGATCTCTTGATTATATATCATGGTGAG
ACTATTTATGGGTTAGTATCGAATCAATTTGAGTTATATATCTTGTTCTTAGTTTATTCCTATAG
AAAAATATGAATCCTGGCAAGTTGATTGTTTATCTATATCAAGTTTGCTTTCTATTAGATCTTTA
TTGATTTGTAGATCGATGCATGAGTAAATTGATGATACTTACTGAGGATTTTTCTTATTTCTGAG
TAAATTGATGATACTTAC
Found at i:8170 original size:16 final size:16
Alignment explanation
Indices: 8077--8158 Score: 92
Period size: 16 Copynumber: 5.1 Consensus size: 16
8067 CCGAACACAA
8077 AAAAAACCCGAACCCG
1 AAAAAACCCGAACCCG
*** *
8093 AAAAAGTTCAAACCCG
1 AAAAAACCCGAACCCG
* * *
8109 AAAAAATCAGAACTCG
1 AAAAAACCCGAACCCG
8125 AAAAAACCCGAACCCG
1 AAAAAACCCGAACCCG
*
8141 AAAAAACACGAACCCG
1 AAAAAACCCGAACCCG
8157 AA
1 AA
8159 CCTGAAAAAA
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 53 1.00
ACGTcount: A:0.54, C:0.29, G:0.12, T:0.05
Consensus pattern (16 bp):
AAAAAACCCGAACCCG
Found at i:9180 original size:21 final size:21
Alignment explanation
Indices: 9155--9214 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
9145 CAAAACAGAA
* *
9155 AGTTTCAATCGATTGAAACAT
1 AGTTTCAGTCGACTGAAACAT
9176 AGTTTCAGTCGACTGAAACAT
1 AGTTTCAGTCGACTGAAACAT
9197 AGTTTCAGTCGACTGAAA
1 AGTTTCAGTCGACTGAAA
9215 GTTATGCAGC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (21 bp):
AGTTTCAGTCGACTGAAACAT
Found at i:15104 original size:941 final size:937
Alignment explanation
Indices: 11498--17102 Score: 9574
Period size: 941 Copynumber: 6.0 Consensus size: 937
11488 ATTCAAATGT
** * *
11498 ATCCTTGCCACCCGTCAAAGATCAACTTGAACTTCTTAAACTTCTAGACAAGTATGTCGAATACC
1 ATCCTTGAGACCCGCCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATGTCGAATACC
*
11563 TTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGCAATTGTCAACC
66 TTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGCAATTGTAAACC
*
11628 TAAG-TACACAAGATTCACAAACAACCAAGTAATCACAACCTAATTGTTTTCTAGGACTCTACAA
131 TAAGAT-CACAAGATTCACAAACAACCAAGTAATCACAACCTAATTGTTTGCTAGGACTCTACAA
* *
11692 GATTGAAGAACCCTAAAGTATGCTCAAACTAGAACAAAAAAGCTAAATAATCGATATGGGTGAAT
195 GATTGAAGAACCCTAAAGTATGCTCAAACTAGAACAAAGAAGCCAAATAATCGATATGGGTGAAT
* *
11757 AAACATCAATTCTTATTGATAACTTGACATATCTTTACAAGAGCTATTTGAACCCTTATATAGTG
260 AAACCTCAATTCTTATTGATAACTTGACTTATCTTTACAAGAGCTATTTGAACCCTTATATAGTG
11822 ATAGGGTCAACGAAAATCCTAAAATAAAAACCTAATTTTCGTCCAAACATAAGGGCTAGGGAAAA
325 ATAGGGTCAAC-AAAATCCTAAAATAAAAACCTAATTTTCGTCCAAACATAAGGGCTAGGGAAAA
* *
11887 ACTAGTCCAAGCCCAACTAGGAAAAGGAAATAAAAGTATAATTAAACAAGGATTGGACTTAGTCA
389 ACTAGTTCAAGCCCAACTAGGAAAAGGAAATAAAAGCATAATTAAACAAGGATTGGACTTAGTCA
*
11952 AACAAGACCCAACCCAAATAACATCCAAACTTAAAAATAAGCTAATCTAAGATAGAATTAAGCCT
454 AACAAGGCCCAACCCAAATAACATCCAAACTTAAAAATAAGCTAATCTAAGATAGAATTAAGCCT
*
12017 AAACAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCC-GCCATTTAGAATCTATA
519 AAACAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCCGGCCATTTAGAATCAATA
* *
12081 GCAAGCGAAGTGATGAACTTGTAATTGATTGGTGTTTTCTTGCTAAAATCATCATCACAGCTCTT
584 GCAAGCAAAGTGATGAACTTGTAATTGATTGGTGTTTTCTTGCTAAAATCATCATCAGAGCTCTT
* * * *
12146 CAATTGAACTAGAATGATCTTCATATCATCAAGATGACTTCGAACAAGGCCCAAGAGTGCATCCT
649 CAATTGAACTAGAATGGTCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAATGCATCCT
* *
12211 TGAACTTCTTAGCTCTTGATCTTGTCATTGGACCATTAGGCAAGCATAAAGGATCGATTGGCACC
714 TGAACTTCTTAGCTCTTGATCTTGTCATTGGACTATTAGGCAAGCATAATGGATCGATTGGCACC
* * *
12276 TTCTTTGGTCTTGAAACAAGTCCATCATTATCTTCATGGTCTCCATGCATCTCCATGCCTCCATG
779 TTCTTTGGTCTTGAAACATGTCCATCGTTATCTCCATGGTCTCCATG------CAT--CTCCATG
* *
12341 CAGCCCATGCACATCCTTTTCTTGCTCTCCATTGTCATCTTCAAGTCCATGATAAGTCCTTGGCG
836 CAGCCCATGCACATCCTTTCCTTCCTCTCCATTGTCATCTTCAAGTCCATGATAAGTCCTTGGCG
*
12406 CATCATTCCCTCCATGATAAGCCTTAGATTCGTATCA
901 CATTATTCCCTCCATGATAAGCCTTAGATTCGTATCA
* *
12443 ATCCTAGAGACTCC-CCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATCTCGACA-A
1 ATCCTTGAGAC-CCGCCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATGTCGA-ATA
* * *
12506 CCTTCACTTAAGCAATCATCTTCTATCGTCGGCCTTAGATCTTCAATTAGACCTGCAAATTGTCA
64 CCTTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGC-AATTGTAA
12571 ACCTAAGATCACAAGATTCACAAACAACCAAGTAATCACAACCTAATTGTTTGCTAGGACTCTAC
128 ACCTAAGATCACAAGATTCACAAACAACCAAGTAATCACAACCTAATTGTTTGCTAGGACTCTAC
12636 AAGATTGAAGAACCCTAAAGTATGCTCAAACTAGAACAAAGAAGCCAAATAATCGATATGGGTGA
193 AAGATTGAAGAACCCTAAAGTATGCTCAAACTAGAACAAAGAAGCCAAATAATCGATATGGGTGA
*
12701 ATAAACCTCAATTCTTATTGATAACTTGACTTATCTTTACAAGAGTTATTTGAACCCTTATATAG
258 ATAAACCTCAATTCTTATTGATAACTTGACTTATCTTTACAAGAGCTATTTGAACCCTTATATAG
*
12766 TGATAGGGTCAACCAAAATCCTAAAATAAAAACCTAATTTTCGTCCAAATATAAGGGCTAGGGAA
323 TGATAGGGTCAA-CAAAATCCTAAAATAAAAACCTAATTTTCGTCCAAACATAAGGGCTAGGGAA
12831 AAACTAGTTCAAGCCCAACTAGGAAAAGGAAATAAAAGCATAATTAAACAAGGATTGGACTTAGT
387 AAACTAGTTCAAGCCCAACTAGGAAAAGGAAATAAAAGCATAATTAAACAAGGATTGGACTTAGT
*
12896 CAAACAAGGCCCAACCCAAATAACATCCAAACTTAAAAATAAGCTCATCTAAGATAGAATTAAGC
452 CAAACAAGGCCCAACCCAAATAACATCCAAACTTAAAAATAAGCTAATCTAAGATAGAATTAAGC
* * *
12961 CCAAAAAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCCGGCCATTCAGAATCAA
517 CTAAACAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCCGGCCATTTAGAATCAA
*
13026 TAGCAAGCAAAGTGATGAACTTGTAATTGAATGGTGTTTTCTTGCTAAAATCATCATCAGAGCTC
582 TAGCAAGCAAAGTGATGAACTTGTAATTGATTGGTGTTTTCTTGCTAAAATCATCATCAGAGCTC
*
13091 TTCAATTGAACTAGAATGGTCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAGTGCATC
647 TTCAATTGAACTAGAATGGTCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAATGCATC
*
13156 CTTGAACTTCTTAGCTCTTGA-----TC-TT-G-----T-------C--AATGGATCGATTGACA
712 CTTGAACTTCTTAGCTCTTGATCTTGTCATTGGACTATTAGGCAAGCATAATGGATCGATTGGCA
*
13200 CCTTCTTTGGTCTTGAAACAAGTCCATCGTTATCTCCAT-G-------G--TCTCCAT-C-GCCC
777 CCTTCTTTGGTCTTGAAACATGTCCATCGTTATCTCCATGGTCTCCATGCATCTCCATGCAGCCC
* *
13253 ATGCACATCCTTTCCTTGCTCTCCATTGTCATCTTCAAGTCCATGATAAGTCCTTGGCGTATTAT
842 ATGCACATCCTTTCCTTCCTCTCCATTGTCATCTTCAAGTCCATGATAAGTCCTTGGCGCATTAT
13318 TCCCTCCATGATAAGCCTTAGATTCGTATCA
907 TCCCTCCATGATAAGCCTTAGATTCGTATCA
*
13349 ATCCTTGAGACCCGCCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATGTCAAATACC
1 ATCCTTGAGACCCGCCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATGTCGAATACC
13414 TTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGCAATTGTAAACC
66 TTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGCAATTGTAAACC
*
13479 TAAGATCACAAGATTCACAAACAACCAAGTAATCACAACCTAATTGTTTGCTGGGACTCTACAAG
131 TAAGATCACAAGATTCACAAACAACCAAGTAATCACAACCTAATTGTTTGCTAGGACTCTACAAG
* **
13544 AATGAAGAACCCTCTAGTATGCTCAAACTAGAACAAAGAAGCCAAATAATCGATATGGGTGAATA
196 ATTGAAGAACCCTAAAGTATGCTCAAACTAGAACAAAGAAGCCAAATAATCGATATGGGTGAATA
* * *
13609 AACGTCAATTCTTATTGATAACTTGACTTATTTTTTCAAGAGCTATTTGAACCCTTATATAGTGA
261 AACCTCAATTCTTATTGATAACTTGACTTATCTTTACAAGAGCTATTTGAACCCTTATATAGTGA
* *
13674 TAGGGTCAACCAAATCCTAAAATAAAAACCTAATTTTCGTCCAAATATAAGGGCTAGGGAAAAAC
326 TAGGGTCAACAAAATCCTAAAATAAAAACCTAATTTTCGTCCAAACATAAGGGCTAGGGAAAAAC
13739 TAGTTCAAGCCCAACGTAGGAAAAGGAATATAAAAGCATAATTAAACAAGGATTGGACTTAGTCA
391 TAGTTCAAGCCCAAC-TAGGAAAAGGAA-ATAAAAGCATAATTAAACAAGGATTGGACTTAGTCA
*
13804 AACAAGGCCCAACCCAAATAACATCCAAACTTAAAAATAAGTTAATCTAAGATAGAATTAAGACC
454 AACAAGGCCCAACCCAAATAACATCCAAACTTAAAAATAAGCTAATCTAAGATAGAATTAAG-CC
* *
13869 T-AACAAAGCAAACTAACGCTAATGGGCTCATGCCACGATGTC-ATCCGGCCATTTGGAATCAAT
518 TAAACAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCCGGCCATTTAGAATCAAT
13932 AGCAAGCAAAGTGATGAACTTGTAATTGATTGGTGTTTTCTTGCTAAAATCATCATCAGAGCTCT
583 AGCAAGCAAAGTGATGAACTTGTAATTGATTGGTGTTTTCTTGCTAAAATCATCATCAGAGCTCT
13997 TCAATTGAACTAGAATGGTCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAATGCATCC
648 TCAATTGAACTAGAATGGTCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAATGCATCC
14062 TTGAACTTCTTAGCTCTTGATCTTGTCATTGGACTATTAGGCAAGCATAATGGATCGATTGGCAC
713 TTGAACTTCTTAGCTCTTGATCTTGTCATTGGACTATTAGGCAAGCATAATGGATCGATTGGCAC
* *
14127 CTTCTTTGGTCTTGAAACATGTCTATAGTTATCTCCATGGTCTCCATGCATCTCCATGCAGCCCA
778 CTTCTTTGGTCTTGAAACATGTCCATCGTTATCTCCATGGTCTCCATGCATCTCCATGCAGCCCA
* * *
14192 TGCACATCCTTTCCTTCCTGTCCATTGTCATCTTCAAGTCCACGATAAGTCCTTGGTGCATTATT
843 TGCACATCCTTTCCTTCCTCTCCATTGTCATCTTCAAGTCCATGATAAGTCCTTGGCGCATTATT
14257 CCCTCCATGATAAGCCTTAGATTCGTATCA
908 CCCTCCATGATAAGCCTTAGATTCGTATCA
14287 ATCCTTGAGACCCGCCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATGTCGAATACC
1 ATCCTTGAGACCCGCCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATGTCGAATACC
14352 TTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGCAATTGTAAACC
66 TTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGCAATTGTAAACC
14417 TAAGATCACAAGATTCACAAACAACCAAGTAATCACAACCTAATTGTTTGCTAGGACTCTACAAG
131 TAAGATCACAAGATTCACAAACAACCAAGTAATCACAACCTAATTGTTTGCTAGGACTCTACAAG
** * *
14482 ATTGAAGAACCCTCTAGTATGCTCAGACTAGAACAAAGAAGCCAAATAACCGATATGGGTGAATA
196 ATTGAAGAACCCTAAAGTATGCTCAAACTAGAACAAAGAAGCCAAATAATCGATATGGGTGAATA
14547 AACCTCAATTCTTATATATTGATAACTTGACTTATCTTTACAAGAGCTATTTGAACCCTTATATA
261 AACCTCAATTC---T-TATTGATAACTTGACTTATCTTTACAAGAGCTATTTGAACCCTTATATA
14612 GTGATAGGGTCAAGCAAAATCCTAAAATAAAAACCTAATTTTCGTCCAAACATAAGGGCTAGGGA
322 GTGATAGGGTCAA-CAAAATCCTAAAATAAAAACCTAATTTTCGTCCAAACATAAGGGCTAGGGA
*
14677 AAAACTAGTCCAAGCCCAACTAGGAAAAGGAAATAAAAGCATAATTAAACAAGGATTGGACTTAG
386 AAAACTAGTTCAAGCCCAACTAGGAAAAGGAAATAAAAGCATAATTAAACAAGGATTGGACTTAG
*
14742 TCAAACAAGGCCCAACCCAAATAACATCCAAACTTAAAAACAAGCTAATCTAAGATAGAATTAAG
451 TCAAACAAGGCCCAACCCAAATAACATCCAAACTTAAAAATAAGCTAATCTAAGATAGAATTAAG
*
14807 CCTAAACAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCC-GCCATTTAGAATCT
516 CCTAAACAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCCGGCCATTTAGAATCA
* *
14871 ATAGCAAGCGAAGTGATGAACTTGTATTTGATTGGTGTTTTCTTGCTAAAATCATCATCAGAGCT
581 ATAGCAAGCAAAGTGATGAACTTGTAATTGATTGGTGTTTTCTTGCTAAAATCATCATCAGAGCT
14936 CTTCAATTGAACTAGAATGGTCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAATGCAT
646 CTTCAATTGAACTAGAATGGTCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAATGCAT
*
15001 CCTTGAACTTCTTAGCTCTTAATCTTGTCATTGGACTATTAGGCAAGCATAATGGATCGATTGGC
711 CCTTGAACTTCTTAGCTCTTGATCTTGTCATTGGACTATTAGGCAAGCATAATGGATCGATTGGC
15066 ACCTTCTTTGGTCTTGAAACATGTCCATCGTTATCTCCATGGTCTCCATGCATCTCCATGCGAGC
776 ACCTTCTTTGGTCTTGAAACATGTCCATCGTTATCTCCATGGTCTCCATGCATCTCCATGC-AGC
* * *
15131 CCATACACATCCTTTCCTTCCTGT-CATTGTCATCTTCAAGTCCATGATAAGTCCTTGGCGCATC
840 CCATGCACATCCTTTCCTTCCTCTCCATTGTCATCTTCAAGTCCATGATAAGTCCTTGGCGCATT
15195 ATTCCCTCCATGATAAGCCTTAGATTCGTATCA
905 ATTCCCTCCATGATAAGCCTTAGATTCGTATCA
*
15228 ATCCTAGAGACTCC-CCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATGTCGAATAC
1 ATCCTTGAGAC-CCGCCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATGTCGAATAC
*
15292 CTTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGCAGATTGTTAA
65 CTTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGCA-ATTGTAAA
* * *
15357 CCTAAGATCACAAGATTCACAAACAACCAAGTATTCAAAACCTAATTGTTTGCTAGGACACTACA
129 CCTAAGATCACAAGATTCACAAACAACCAAGTAATCACAACCTAATTGTTTGCTAGGACTCTACA
* *
15422 AGATTGAAGAACCCTAAAGTATGCTCAAACTAGATCAAAGAAGCCAAATAATCGATATGTGTGAA
194 AGATTGAAGAACCCTAAAGTATGCTCAAACTAGAACAAAGAAGCCAAATAATCGATATGGGTGAA
*
15487 TAAACCTCAATTCTTATTGATAACTTGACTTATCTTTACAAGAGCTATTCGAACCCTTATATAGT
259 TAAACCTCAATTCTTATTGATAACTTGACTTATCTTTACAAGAGCTATTTGAACCCTTATATAGT
* *
15552 GATAGGGTCAACCAAATCCTAAAATAAAAACCTAATTTTCGTCCAAATATAAGGGCTAGGGAAAA
324 GATAGGGTCAACAAAATCCTAAAATAAAAACCTAATTTTCGTCCAAACATAAGGGCTAGGGAAAA
*
15617 AATAGTTCAAGCCCAACTAGGAAAAGG-AATAAAAGCATAATTAAACAAGGATTGGACTTAGTCA
389 ACTAGTTCAAGCCCAACTAGGAAAAGGAAATAAAAGCATAATTAAACAAGGATTGGACTTAGTCA
*
15681 AACAAGGCCCAACCCAAATAACATCCAAACTTAAAAATAAGCTAATCTAAGATAGAATTAAGCCC
454 AACAAGGCCCAACCCAAATAACATCCAAACTTAAAAATAAGCTAATCTAAGATAGAATTAAGCCT
15746 AAACAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCCGGCCATTTAGAATCAATA
519 AAACAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCCGGCCATTTAGAATCAATA
15811 GCAAGCAAAGTGATGAACTTGTAATTGATTGGTGTTTTCTTGCTAAAATCATCATCAGAGCTCTT
584 GCAAGCAAAGTGATGAACTTGTAATTGATTGGTGTTTTCTTGCTAAAATCATCATCAGAGCTCTT
15876 CAATTGAACTAGAATGGTCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAATGCATCCT
649 CAATTGAACTAGAATGGTCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAATGCATCCT
*
15941 TGAACTTCTTAGCTCTTGATCTTGTCATTGGACCATTAGGCAAGCATAATGGATCGATTGGCACC
714 TGAACTTCTTAGCTCTTGATCTTGTCATTGGACTATTAGGCAAGCATAATGGATCGATTGGCACC
*
16006 TTCTTTGGTCTTGAAACA-GTCCATAGTTATCTCCAT-G-------G--TCTCCATGCAGCCCAT
779 TTCTTTGGTCTTGAAACATGTCCATCGTTATCTCCATGGTCTCCATGCATCTCCATGCAGCCCAT
* * *
16060 GCACATCCTTTCCTTGCTCTCCATTGTCATCTTCAAGTCCATGATAAGTCCTTGGCGTATTATTT
844 GCACATCCTTTCCTTCCTCTCCATTGTCATCTTCAAGTCCATGATAAGTCCTTGGCGCATTATTC
16125 CCTCCATGATAAGCCTTAGATTCGTATCA
909 CCTCCATGATAAGCCTTAGATTCGTATCA
16154 ATCCTTGAGACCCGCCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATGTCGAATACC
1 ATCCTTGAGACCCGCCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATGTCGAATACC
*
16219 TTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGCAGATTGTTAAC
66 TTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGCA-ATTGTAAAC
* * *
16284 CTAAGATCACAAGATTCACAAACAACCAAGTATTCAAAACCTAATTGTTTGCTAGGACACTACAA
130 CTAAGATCACAAGATTCACAAACAACCAAGTAATCACAACCTAATTGTTTGCTAGGACTCTACAA
* *
16349 GATTGAAGAACCCTAAAGTATGCTCAAACTAGATCAAAGAAGCCAAATAATCGATATGTGTGAAT
195 GATTGAAGAACCCTAAAGTATGCTCAAACTAGAACAAAGAAGCCAAATAATCGATATGGGTGAAT
*
16414 AAACCTCAATTCTTATTGATAACTTGACTTATCTTTACAAGAGCTATTCGAACCCTTATATAGTG
260 AAACCTCAATTCTTATTGATAACTTGACTTATCTTTACAAGAGCTATTTGAACCCTTATATAGTG
16479 ATAGGGTCAACGAAAATCCTAAAATAAAAACCTAATTTTCGTCCAAACATAAGGGCTAGGGAAAA
325 ATAGGGTCAAC-AAAATCCTAAAATAAAAACCTAATTTTCGTCCAAACATAAGGGCTAGGGAAAA
*
16544 AATAGTTCAAGCCCAACTAGGAAAAGGAAATAAAAGCATAATTAAACAAGGATTGGACTTAGTCA
389 ACTAGTTCAAGCCCAACTAGGAAAAGGAAATAAAAGCATAATTAAACAAGGATTGGACTTAGTCA
*
16609 AACAAGGCCCAACCCAAATAACATCCAAACTTAAAAACAAGCTAATCTAAGATAGAATTAAGCCT
454 AACAAGGCCCAACCCAAATAACATCCAAACTTAAAAATAAGCTAATCTAAGATAGAATTAAGCCT
*
16674 AAACAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCC-GCCATTTAGAATCTATA
519 AAACAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCCGGCCATTTAGAATCAATA
* * *
16738 GCAAGCGAAGTGATGAACTTGTATTTGATTGGTGTTTTCTTGCTAAAATCATCATCATAGCTCTT
584 GCAAGCAAAGTGATGAACTTGTAATTGATTGGTGTTTTCTTGCTAAAATCATCATCAGAGCTCTT
* *
16803 CAATTGAACTAGAATGATCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAGTGCATCCT
649 CAATTGAACTAGAATGGTCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAATGCATCCT
*
16868 TGAACTTCTTAGCTCTTAATCTTGTCATTGGACTATTAGGCAAGCATAATGGATCGATTGGCACC
714 TGAACTTCTTAGCTCTTGATCTTGTCATTGGACTATTAGGCAAGCATAATGGATCGATTGGCACC
16933 TTCTTTGGTCTTGAAACATGTCCATCGTTATCTCCATGGTCTCCATGCATCTCCATGCAGCCCAT
779 TTCTTTGGTCTTGAAACATGTCCATCGTTATCTCCATGGTCTCCATGCATCTCCATGCAGCCCAT
* * *
16998 GCACATCCTTTCCTTCCTGTCCATTGTCATCTTAAAGTCCATGATAAGTCCTTGGTGCATTATTC
844 GCACATCCTTTCCTTCCTCTCCATTGTCATCTTCAAGTCCATGATAAGTCCTTGGCGCATTATTC
17063 CCTCCATGATAAGCCTTAGATTCGTATCA
909 CCTCCATGATAAGCCTTAGATTCGTATCA
17092 ATCCTTGAGAC
1 ATCCTTGAGAC
17103 TCG
Statistics
Matches: 4446, Mismatches: 144, Indels: 147
0.94 0.03 0.03
Matches are distributed among these distances:
904 70 0.02
905 388 0.09
906 341 0.08
907 3 0.00
908 6 0.00
910 3 0.00
911 2 0.00
912 1 0.00
917 1 0.00
918 1 0.00
924 1 0.00
925 27 0.01
926 513 0.12
927 301 0.07
928 166 0.04
929 1 0.00
934 1 0.00
935 2 0.00
936 172 0.04
937 303 0.07
938 536 0.12
939 1 0.00
940 4 0.00
941 588 0.13
942 247 0.06
943 68 0.02
945 106 0.02
946 433 0.10
947 160 0.04
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.28
Consensus pattern (937 bp):
ATCCTTGAGACCCGCCAAAGATCAACTTGAACTTCTTCAACTTCTAGACAAGTATGTCGAATACC
TTCACTTAAGCAATCCTCTTCTTTCGTCGGCCTTAGATCTTCAATTAGACCTGCAATTGTAAACC
TAAGATCACAAGATTCACAAACAACCAAGTAATCACAACCTAATTGTTTGCTAGGACTCTACAAG
ATTGAAGAACCCTAAAGTATGCTCAAACTAGAACAAAGAAGCCAAATAATCGATATGGGTGAATA
AACCTCAATTCTTATTGATAACTTGACTTATCTTTACAAGAGCTATTTGAACCCTTATATAGTGA
TAGGGTCAACAAAATCCTAAAATAAAAACCTAATTTTCGTCCAAACATAAGGGCTAGGGAAAAAC
TAGTTCAAGCCCAACTAGGAAAAGGAAATAAAAGCATAATTAAACAAGGATTGGACTTAGTCAAA
CAAGGCCCAACCCAAATAACATCCAAACTTAAAAATAAGCTAATCTAAGATAGAATTAAGCCTAA
ACAAAGCAAACTAATGCTAATGGGCTCATGCCACGATGTCAATCCGGCCATTTAGAATCAATAGC
AAGCAAAGTGATGAACTTGTAATTGATTGGTGTTTTCTTGCTAAAATCATCATCAGAGCTCTTCA
ATTGAACTAGAATGGTCTTCATATCATCAAGATGACTTCGAACAAGGCCAAATAATGCATCCTTG
AACTTCTTAGCTCTTGATCTTGTCATTGGACTATTAGGCAAGCATAATGGATCGATTGGCACCTT
CTTTGGTCTTGAAACATGTCCATCGTTATCTCCATGGTCTCCATGCATCTCCATGCAGCCCATGC
ACATCCTTTCCTTCCTCTCCATTGTCATCTTCAAGTCCATGATAAGTCCTTGGCGCATTATTCCC
TCCATGATAAGCCTTAGATTCGTATCA
Done.