Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006754.1 Corchorus capsularis cultivar CVL-1 contig06775, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40370

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
395--435
15
2.7
15
82
17
57
21
4
0
73
1.02
8078--8173
22
4.7
22
69
21
91
26
2
20
51
1.59
8056--8173
59
2.0
59
98
0
227
25
4
18
51
1.64
8490--8548
27
2.2
27
82
11
68
28
28
3
38
1.73
8805--8873
22
3.1
22
82
0
75
36
13
5
44
1.67
8887--8935
22
2.2
22
85
7
64
26
14
6
53
1.64
10759--10804
22
2.1
22
83
0
56
36
17
10
34
1.85
10824--10895
23
3.2
23
84
5
94
40
19
5
34
1.75
10770--11001
22
10.8
22
69
14
94
34
15
9
40
1.80
10900--11001
44
2.3
44
77
5
107
30
13
9
46
1.76
11228--11304
29
2.6
29
80
10
84
28
11
24
35
1.91
11429--11580
22
6.8
22
75
10
103
32
14
10
42
1.80
11453--11683
22
10.5
22
70
15
93
32
15
9
42
1.80
11634--11681
20
2.3
20
78
7
51
33
16
6
43
1.73
11724--11764
22
1.9
21
95
5
73
48
19
4
26
1.69
11722--11771
22
2.4
20
78
12
64
46
16
8
30
1.75
11710--11911
88
2.3
87
80
8
230
39
16
8
35
1.79
11831--11911
22
3.7
21
81
6
81
38
12
8
40
1.74
11764--11911
44
3.3
43
71
7
118
37
15
9
37
1.80
12376--13119
374
2.0
365
91
4
1215
39
11
13
35
1.81
15716--15754
20
2.0
20
89
0
60
20
43
7
28
1.79
16121--16222
33
3.1
33
88
0
159
5
39
42
12
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16857--17037
93
1.9
93
87
0
263
26
22
11
40
1.87
23326--23351
1
26.0
1
100
0
52
0
0
100
0
0.00
23375--23399
2
12.5
2
100
0
50
52
0
48
0
1.00
32043--32406
156
2.3
155
81
6
423
33
18
15
32
1.92
33179--33207
7
4.1
7
100
0
58
55
0
0
44
0.99
34236--34286
17
3.1
16
83
13
59
23
21
21
33
1.97
35453--35506
17
3.2
16
76
10
54
53
3
3
38
1.36
35707--35782
29
2.6
29
83
6
91
19
21
18
40
1.91
39323--39620
24
12.0
24
89
5
416
16
19
38
26
1.92
39323--39620
50
6.0
50
90
3
460
16
19
38
26
1.92
39332--39620
74
3.9
74
89
3
456
16
19
38
26
1.92

Tables:   1

The End!