genome.fa.s6758.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006758.1 Corchorus capsularis cultivar CVL-1 contig06779, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85031

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--40	2	20.0	2	100	0	80	50	0	0	50	1.00
16783--17059	145	1.9	145	96	0	518	20	22	16	39	1.92
20658--20818	10	13.6	10	70	28	88	31	27	0	40	1.57
20653--20818	35	4.6	35	78	20	198	31	28	0	39	1.57
20703--20845	25	5.8	25	96	3	256	32	27	0	40	1.57
20653--20793	60	2.4	58	79	19	189	31	28	0	39	1.57
21051--21112	32	1.9	32	100	0	124	22	32	32	12	1.92
21131--21161	15	2.0	15	93	6	53	35	0	0	64	0.94
21183--21332	26	6.0	26	75	12	134	31	0	11	56	1.39
21174--21329	73	2.1	73	98	0	303	32	0	10	56	1.39
21309--21340	15	2.1	15	94	0	55	31	3	12	53	1.54
21358--21402	22	2.0	23	82	4	56	33	2	8	55	1.43
22910--22984	32	2.3	32	86	2	96	44	6	6	42	1.57
28273--28350	27	2.8	27	83	9	70	16	23	0	60	1.36
28383--28654	21	13.5	20	71	18	174	22	20	6	50	1.71
28517--28654	43	3.2	42	83	6	179	21	19	6	52	1.69
28509--28684	64	2.7	62	82	8	178	21	19	5	53	1.65
28638--28711	29	2.3	33	82	13	84	21	16	4	58	1.55
28692--28742	22	2.3	22	83	6	68	19	21	3	54	1.60
28716--28841	35	3.6	34	86	7	155	19	25	2	53	1.57
28816--28855	14	2.9	14	88	0	62	25	22	0	52	1.47
28830--28876	21	2.2	21	84	0	58	19	23	0	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28847--28888	21	2.0	21	85	0	57	16	19	2	61	1.44
28966--29086	34	3.4	34	75	16	95	27	14	8	49	1.72
28927--29125	74	2.7	71	75	9	188	27	17	6	48	1.71
28983--29259	38	7.3	39	75	14	151	26	16	6	49	1.71
29029--29093	34	1.9	33	90	3	103	24	13	7	53	1.66
29099--29259	38	4.2	37	82	7	162	27	17	6	48	1.71
29165--29225	19	3.4	16	68	23	50	26	16	6	50	1.69
31910--31939	6	5.0	6	100	0	60	50	16	0	33	1.46
33464--33503	20	2.0	19	90	9	62	65	12	7	15	1.47
35532--35924	14	27.3	14	70	18	131	44	4	20	30	1.71
35573--35656	22	3.8	22	84	6	91	41	5	21	30	1.77
35531--35756	58	4.0	54	80	12	233	43	4	21	30	1.72
35646--35714	22	3.1	22	81	8	86	39	2	24	33	1.70
35532--35919	8	52.6	8	66	23	64	44	4	20	30	1.71
35788--35911	22	5.6	22	75	12	110	42	3	21	32	1.69
36114--36454	71	4.8	72	88	4	509	29	18	27	24	1.98
36114--36453	141	2.4	141	94	1	576	29	18	27	24	1.98
36954--36987	10	3.1	11	87	12	52	0	17	0	82	0.67
36959--36996	20	1.9	20	84	10	51	2	10	2	84	0.83
37238--37273	18	2.0	18	89	10	56	2	19	0	77	0.88
37247--37279	11	3.1	11	91	4	50	6	15	0	78	0.93
37319--37372	19	2.8	19	81	10	58	33	14	3	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37278--37475	103	1.9	103	87	4	292	30	17	7	43	1.77
37738--37784	12	3.9	12	83	10	69	25	8	17	48	1.74
38103--38141	15	2.6	16	80	12	55	35	17	10	35	1.84
38203--38297	43	2.3	42	87	10	133	8	23	10	57	1.59
38221--38289	21	3.3	21	66	26	56	10	21	10	57	1.60
42211--42247	17	2.3	17	86	9	51	0	10	5	83	0.79
44452--44526	37	2.0	37	100	0	150	26	32	17	24	1.97
45363--45469	15	7.9	15	75	23	103	55	9	0	34	1.39
45388--45463	11	6.3	11	71	22	55	56	7	0	35	1.28
45373--45519	26	5.8	26	81	13	173	55	8	0	35	1.36
45857--45912	27	2.1	26	83	12	69	48	1	1	48	1.22
48577--48633	26	2.2	25	80	17	64	77	7	12	3	1.10
51192--51234	21	2.1	20	82	4	50	37	16	9	37	1.81
64720--64744	2	12.5	2	100	0	50	48	0	0	52	1.00
68411--68443	2	16.5	2	93	0	57	48	0	0	51	1.00
68676--68758	39	2.1	40	82	8	98	15	13	16	54	1.72
79514--79558	21	2.2	21	84	4	56	68	6	8	15	1.36
80894--80941	19	2.5	19	90	6	71	29	20	4	45	1.70

Tables:   1

The End!