genome.fa.s6760.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006760.1 Corchorus capsularis cultivar CVL-1 contig06781, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55282

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50--101	14	3.6	15	72	17	56	44	9	11	34	1.73
50--88	15	2.7	15	84	4	53	46	10	10	33	1.72
401--435	12	2.9	12	100	0	70	51	17	5	25	1.67
2123--2328	36	5.5	36	77	7	151	27	19	19	33	1.96
2214--2400	39	4.8	39	77	6	209	30	17	18	33	1.94
2157--2417	116	2.2	117	94	0	452	28	18	19	33	1.95
2214--2420	77	2.7	76	73	8	202	28	17	18	34	1.95
2416--2626	43	5.1	43	82	6	231	24	26	19	28	1.99
2607--2645	19	2.1	19	95	0	69	33	28	7	30	1.85
2527--2711	99	1.9	96	81	12	214	28	24	17	29	1.97
6079--6292	64	3.3	64	89	3	297	34	13	25	26	1.93
6569--7042	169	2.8	167	83	5	584	36	13	24	25	1.93
6575--7047	85	5.6	85	83	6	570	35	14	23	26	1.93
7073--7215	60	2.4	60	81	3	166	37	16	20	24	1.93
7044--7247	60	3.4	58	71	10	153	36	14	23	25	1.93
7143--7434	156	1.9	158	83	2	383	37	13	23	24	1.92
7301--7684	62	6.5	60	75	8	304	39	12	22	25	1.89
7301--7742	58	7.5	59	75	9	311	39	12	23	24	1.90
7301--7711	181	2.3	174	84	6	509	38	13	23	24	1.90
7620--7756	58	2.4	58	80	2	150	38	12	24	24	1.90
18017--18046	15	2.0	15	100	0	60	20	6	26	46	1.75
22297--22339	22	2.0	22	100	0	86	11	46	32	9	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23477--23506	15	2.0	15	100	0	60	26	6	20	46	1.75
30072--30125	2	27.5	2	77	3	56	51	3	1	42	1.30
35187--35219	6	5.5	6	92	0	57	33	0	12	54	1.37
38582--38633	10	4.8	10	77	15	50	13	46	26	13	1.80
39247--39280	12	2.8	12	90	0	59	50	5	11	32	1.63
44136--44382	58	4.2	58	92	1	422	27	19	7	46	1.75
44136--44382	117	2.1	116	93	1	422	27	19	7	46	1.75
44372--44427	16	3.8	16	67	28	52	12	32	7	48	1.68
44370--44426	26	2.2	26	96	0	105	12	31	7	49	1.67
44477--44633	16	10.9	14	64	23	51	17	22	2	57	1.52
44498--44546	25	2.0	25	95	0	89	18	22	0	59	1.38
44470--44578	57	1.9	56	87	9	159	16	22	1	58	1.47
44470--44659	57	3.4	54	73	20	149	16	23	2	57	1.52
44523--44749	36	6.2	35	77	12	165	16	24	2	56	1.53
44581--44621	13	3.5	13	75	25	54	19	24	4	51	1.66
44547--44721	58	3.0	58	75	11	187	17	25	2	55	1.53
44571--44650	22	3.7	22	91	1	117	17	25	3	53	1.60
44844--44953	57	1.9	57	88	3	168	23	21	7	47	1.76
44850--44984	57	2.4	57	85	3	148	26	20	6	45	1.76
45073--45720	53	12.3	53	86	3	880	25	19	8	46	1.78
45073--45723	158	4.1	158	88	2	882	25	19	8	46	1.78
50348--50375	14	2.0	14	100	0	56	35	14	7	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52809--53083	133	2.1	133	96	0	505	29	11	21	37	1.88
54166--54468	150	2.0	150	100	0	606	27	30	9	32	1.89

Tables:   1

The End!