genome.fa.s6762.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006762.1 Corchorus capsularis cultivar CVL-1 contig06783, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49841

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352--412	30	2.0	30	87	0	86	14	21	19	44	1.86
1000--1194	36	5.4	36	79	9	141	48	9	15	27	1.75
1040--1174	37	3.7	37	90	2	209	47	8	15	28	1.74
1006--1194	73	2.6	71	76	9	200	48	8	15	27	1.75
1178--1402	41	5.4	41	92	4	346	44	9	21	23	1.82
1409--1500	36	2.6	36	81	10	100	53	13	10	22	1.70
1530--1689	37	4.3	37	91	0	239	42	8	25	24	1.82
1664--1850	36	5.5	32	80	8	133	37	8	24	29	1.85
1712--1864	36	4.2	36	89	1	211	40	8	21	29	1.83
1682--1864	72	2.6	72	83	6	225	39	9	21	29	1.85
1764--1879	36	3.2	35	86	7	119	43	7	19	28	1.79
1681--1891	72	3.0	71	80	9	195	42	9	20	27	1.82
8559--8590	12	2.7	12	95	0	55	21	43	25	9	1.82
8586--8683	30	3.2	29	77	11	97	24	36	27	11	1.89
8586--8667	33	2.6	33	88	5	116	24	34	28	13	1.93
13654--13713	30	2.0	30	90	0	93	35	21	23	20	1.96
28414--28443	16	1.9	16	93	6	53	36	3	13	46	1.60
35365--35407	23	2.0	23	86	9	63	53	2	6	37	1.41
42964--43045	30	2.7	29	84	5	101	24	24	9	41	1.85
43736--43806	29	2.4	29	83	6	90	43	8	21	26	1.81
43864--43890	7	3.9	7	100	0	54	85	14	0	0	0.61
44340--44373	5	6.8	5	93	0	50	82	11	0	5	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49728--49765	2	19.0	2	100	0	76	50	50	0	0	1.00

Tables:   1

The End!