Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006763.1 Corchorus capsularis cultivar CVL-1 contig06784, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86924

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38--125
40
2.2
41
89
2
133
43
22
10
23
1.84
7--135
41
3.1
41
81
5
154
40
24
11
23
1.88
5073--5131
30
2.0
30
86
6
84
23
30
15
30
1.95
5512--5648
33
4.2
33
89
2
208
43
17
10
27
1.82
5537--5681
66
2.2
66
82
2
175
42
19
11
26
1.84
5674--5778
33
3.2
33
80
2
131
45
20
9
24
1.80
6783--8272
539
2.8
540
96
0
2741
37
18
20
24
1.94
7219--8721
539
2.9
506
66
18
1238
37
17
20
24
1.94
8859--12997
540
7.7
540
92
1
6696
37
17
20
24
1.93
20647--20717
20
3.4
21
80
14
85
12
9
12
64
1.49
22965--23065
50
2.0
51
98
1
195
22
25
17
33
1.96
28032--28088
22
2.5
23
75
11
64
10
8
5
75
1.18
28034--28064
16
1.9
16
93
0
53
6
9
6
77
1.12
29212--29260
21
2.3
21
82
6
55
40
16
28
14
1.87
36769--36815
10
4.8
10
89
2
69
29
0
36
34
1.58
41966--42009
22
2.0
22
83
12
56
45
0
25
29
1.54
45655--45698
22
2.0
22
83
12
56
45
0
25
29
1.54
48170--48218
21
2.3
21
82
6
55
16
28
14
40
1.87
51219--51255
19
1.9
19
88
0
56
32
21
5
40
1.76
58008--58063
29
1.9
29
85
7
78
50
16
10
23
1.76
63476--63509
14
2.2
16
90
10
54
58
11
14
14
1.63
67011--67053
21
2.0
21
95
0
77
41
0
34
23
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70880--71026
73
2.0
75
84
7
194
40
18
8
32
1.81
71198--71256
30
2.0
30
86
6
84
23
13
5
57
1.56
73409--73439
16
1.9
16
93
0
53
12
25
6
54
1.62
73877--73927
21
2.4
21
87
6
68
35
15
13
35
1.87
74424--74469
21
2.1
22
84
4
58
28
10
19
41
1.85
75054--75156
21
4.9
21
83
8
129
37
17
12
32
1.87
75058--75150
42
2.2
42
90
3
143
35
18
13
32
1.90
75249--75279
16
1.9
16
93
0
53
48
16
6
29
1.70
76719--76760
21
2.0
21
95
0
75
26
28
19
26
1.98
81608--81633
1
26.0
1
100
0
52
100
0
0
0
0.00
82945--82980
18
2.0
18
100
0
72
5
0
22
72
1.05
83644--83672
14
2.1
14
100
0
58
48
6
0
44
1.29

Tables:   1

The End!