genome.fa.s6765.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006765.1 Corchorus capsularis cultivar CVL-1 contig06786, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68277

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1608--1639	16	2.0	16	93	0	55	53	31	3	12	1.54
2301--2327	2	13.5	2	100	0	54	0	48	0	51	1.00
3176--3200	13	1.9	13	100	0	50	24	16	44	16	1.86
5477--5513	19	2.0	19	89	5	58	32	2	0	64	1.07
5631--5657	13	2.1	13	100	0	54	40	0	14	44	1.46
5799--5832	2	17.0	2	100	0	68	50	0	0	50	1.00
8365--8460	31	3.3	30	65	21	78	51	7	17	23	1.71
8551--8632	41	2.0	41	85	4	112	48	17	4	29	1.67
9492--9540	22	2.3	22	85	3	64	12	51	0	36	1.40
9969--10020	21	2.4	23	72	15	58	21	28	21	28	1.98
11343--11384	22	1.9	22	85	9	59	28	11	4	54	1.57
11529--11610	22	3.7	23	79	12	75	37	9	13	39	1.78
11550--11863	44	7.4	42	74	12	209	34	15	9	39	1.80
11599--11656	23	2.5	23	88	0	80	43	15	5	36	1.69
11683--11863	22	8.5	22	77	7	160	32	16	9	41	1.81
11813--11863	19	2.6	20	93	6	95	25	19	11	43	1.85
11970--12022	22	2.4	22	87	6	72	37	13	9	39	1.77
12015--12362	22	15.6	22	66	17	103	34	16	9	39	1.80
13385--13448	32	2.0	31	87	3	92	43	4	21	29	1.73
13549--13610	31	2.0	31	90	3	99	48	3	16	32	1.62
13327--13656	164	2.0	164	93	2	565	44	6	13	35	1.69
14787--14824	11	3.5	11	85	10	51	57	2	0	39	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15329--15365	19	2.0	19	89	5	58	64	0	0	35	0.94
18191--18320	66	2.0	66	96	0	242	33	14	18	33	1.91
18482--18526	2	22.5	2	82	17	58	46	2	2	48	1.26
19253--19378	66	1.9	66	95	0	225	33	14	18	34	1.91
19103--19520	232	1.8	231	83	3	563	36	16	16	30	1.91
19554--19578	2	12.5	2	100	0	50	48	0	0	52	1.00
22641--22809	79	2.2	76	90	7	261	50	1	13	33	1.52
22723--22877	71	2.2	69	84	8	190	50	1	12	34	1.52
22983--23023	19	2.1	20	90	4	66	53	9	7	29	1.60
23025--23213	95	2.0	95	95	2	344	38	14	15	31	1.87
28946--29012	31	2.2	31	86	5	93	47	10	17	23	1.79
31649--31685	6	5.4	7	90	9	51	43	0	2	54	1.14
34000--34029	3	10.3	3	92	7	53	63	0	0	36	0.95
35121--35235	57	2.0	57	96	0	212	33	17	19	29	1.94
38640--38729	24	3.5	24	75	16	90	26	50	12	11	1.73
38627--38933	54	5.9	54	82	9	370	24	46	13	14	1.81
38693--38781	42	2.1	42	85	0	124	23	44	12	19	1.84
38638--38933	96	2.9	98	83	7	355	24	46	13	15	1.81
38765--38909	30	5.2	30	64	24	102	24	44	14	17	1.86
38813--38894	24	3.2	24	65	18	65	25	43	13	17	1.85
38898--38945	12	4.0	12	80	0	51	25	52	10	12	1.71
38627--38939	150	2.1	150	81	4	355	24	46	13	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38959--39010	27	1.9	27	96	0	95	28	26	30	13	1.94
39115--39146	12	2.7	12	95	0	55	25	53	9	12	1.68
39272--39298	6	4.5	6	100	0	54	14	51	33	0	1.43
41154--41178	12	2.1	12	100	0	50	32	20	24	24	1.98
51336--51361	2	13.0	2	100	0	52	50	0	50	0	1.00
56947--57001	28	1.9	29	96	3	103	32	21	27	18	1.96
61907--62049	48	3.0	48	88	2	180	28	13	27	30	1.95
62254--62334	24	3.3	23	77	12	90	19	18	34	27	1.95
62314--62353	15	2.6	16	96	4	73	20	17	35	27	1.95
62588--62807	114	1.9	115	86	5	313	30	19	16	34	1.94

Tables:   1

The End!