Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006766.1 Corchorus capsularis cultivar CVL-1 contig06787, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28361

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
394--533
44
3.3
44
89
6
193
39
0
5
55
1.22
2129--2336
62
3.4
63
88
6
286
35
24
21
18
1.96
2129--2333
31
6.6
31
83
6
220
35
24
21
18
1.95
2129--2299
93
1.8
93
88
2
263
35
25
21
17
1.95
2129--2345
93
2.3
93
82
6
244
35
24
21
18
1.95
2524--2594
35
2.0
35
94
0
124
39
11
19
29
1.87
3559--3584
13
2.0
13
100
0
52
30
7
30
30
1.85
3044--3905
434
2.0
434
96
0
1580
34
15
15
34
1.89
4122--4180
30
2.0
30
93
0
100
32
11
25
30
1.92
5741--5808
27
2.5
27
76
11
77
29
10
26
33
1.89
7793--7858
25
2.5
26
83
9
82
28
12
25
33
1.92
17726--17752
6
4.5
6
100
0
54
51
0
14
33
1.43
20054--20119
31
2.2
31
89
5
100
42
10
18
28
1.83
21389--21460
31
2.3
31
83
9
101
38
18
11
31
1.85
22082--22116
11
3.2
11
83
0
52
77
17
5
0
0.96

Tables:   1

The End!