Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006767.1 Corchorus capsularis cultivar CVL-1 contig06788, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64976

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
555--590
19
1.9
18
88
5
54
41
2
22
33
1.68
3295--3330
19
1.9
18
88
5
54
30
22
2
44
1.67
6196--6250
24
2.3
24
93
0
92
36
32
16
14
1.89
11743--11831
27
3.4
26
89
9
128
22
28
29
20
1.98
11790--11872
41
2.0
41
88
4
123
21
28
26
22
1.99
11836--11935
27
3.7
27
73
5
94
22
28
31
19
1.97
11763--11897
68
2.0
68
86
0
189
23
29
26
20
1.99
12696--12741
24
1.9
24
86
0
65
39
30
10
19
1.86
12695--12748
24
2.2
24
80
0
63
38
31
12
16
1.87
22457--22515
30
1.9
30
83
10
75
52
6
11
28
1.63
24205--24241
19
2.0
18
89
5
56
32
21
2
43
1.67
32189--32255
21
3.2
21
70
16
66
26
11
26
34
1.91
35769--35870
32
3.2
32
79
8
84
14
20
31
33
1.93
35750--35841
16
5.8
16
70
5
69
13
20
31
34
1.91
35801--35871
32
2.2
32
87
0
97
12
18
33
35
1.89
35822--35884
32
2.0
32
83
0
81
14
17
34
33
1.90
36310--36371
18
3.6
18
89
8
69
54
0
0
45
0.99
36466--36497
3
10.3
3
93
6
55
0
34
0
65
0.93
39411--39441
3
10.0
3
93
6
53
35
0
0
64
0.94
39533--39576
15
2.8
16
86
6
63
13
13
25
47
1.79
40108--40179
31
2.3
31
73
4
74
54
11
8
26
1.64
40364--40409
16
2.9
16
83
6
58
2
17
45
34
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40342--40419
38
2.0
38
82
7
95
5
19
44
30
1.72
42022--42063
16
2.7
16
85
3
50
14
11
30
42
1.81
42057--42097
16
2.5
17
84
7
59
9
19
36
34
1.85
42929--42973
16
2.8
16
86
0
63
11
22
35
31
1.89
43013--43063
16
3.2
16
76
20
61
13
23
31
31
1.93
44779--44999
86
2.6
87
89
2
356
33
17
7
41
1.77
46335--46450
35
3.3
35
77
7
119
33
18
17
31
1.94
46428--46483
25
2.2
25
93
0
94
32
26
16
25
1.96
46436--46484
25
2.0
25
100
0
98
28
30
16
24
1.96
46461--46872
35
11.8
35
94
1
657
32
23
16
28
1.96
46879--47133
35
7.3
35
81
3
309
37
23
21
17
1.94
48112--48167
15
3.9
14
88
4
76
0
14
0
85
0.59
48112--48167
30
1.9
29
92
7
96
0
14
0
85
0.59
48112--48166
11
5.0
11
79
16
69
0
12
0
87
0.55
48481--48523
21
2.0
22
91
8
72
9
20
2
67
1.30
48488--48534
20
2.3
21
85
10
62
10
21
0
68
1.20
48488--48537
21
2.3
21
83
10
57
10
22
0
68
1.19
49000--49036
10
3.9
9
86
13
56
0
16
0
83
0.64
49003--49053
20
2.6
19
84
9
66
3
15
1
78
0.99
52617--52837
86
2.6
86
94
0
388
33
17
6
42
1.75
53005--53038
16
2.1
17
88
5
52
14
5
2
76
1.09
60256--60315
21
2.9
21
71
0
66
31
20
11
36
1.88

Tables:   1

The End!