Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006768.1 Corchorus capsularis cultivar CVL-1 contig06789, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29394

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
143--5627
81
66.7
81
74
9
3464
14
25
22
37
1.92
62--322
126
2.1
125
85
2
344
17
23
23
35
1.95
143--5627
41
133.4
41
74
10
3801
14
25
22
37
1.92
143--529
207
1.9
207
87
1
578
15
23
22
38
1.93
350--1029
126
5.4
126
74
9
464
16
24
21
36
1.94
84--863
334
2.3
333
96
0
1429
16
24
22
37
1.94
297--1114
85
9.8
86
73
12
489
16
24
22
36
1.94
910--1075
46
3.8
46
72
15
154
18
27
22
31
1.97
297--5625
249
21.6
251
71
13
1147
14
25
22
37
1.92
143--5627
163
33.3
163
75
8
3455
14
25
22
37
1.92
122--5627
122
44.6
122
73
10
3427
14
25
22
37
1.92
4537--4819
87
3.3
87
73
18
306
16
25
21
37
1.93
75--5624
331
16.9
330
76
10
1879
14
25
22
37
1.92
6801--6825
8
3.1
8
100
0
50
28
12
24
36
1.91
12104--12137
8
4.2
8
100
0
68
26
11
26
35
1.91
13049--13122
15
5.6
15
65
28
60
16
35
32
16
1.91
13050--13142
25
3.7
25
97
0
168
15
34
33
17
1.91
17664--17700
19
2.0
18
89
5
56
40
8
21
29
1.82
29119--29154
19
1.9
18
88
5
54
33
22
2
41
1.68

Tables:   1

The End!