Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006769.1 Corchorus capsularis cultivar CVL-1 contig06790, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43254

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4882--4964
41
2.0
41
97
0
157
37
25
15
21
1.93
6241--6316
28
2.6
30
84
12
97
43
13
15
27
1.84
6370--6557
87
2.1
88
83
4
238
25
18
17
39
1.92
6628--6655
2
14.0
2
100
0
56
50
0
0
50
1.00
6824--6898
21
3.5
21
68
10
71
21
10
28
40
1.86
6879--7113
88
2.7
88
76
7
228
23
18
18
38
1.93
13346--13389
11
3.6
13
72
27
51
68
13
0
18
1.22
14781--14888
34
3.0
36
84
9
132
31
14
11
42
1.81
23658--23721
27
2.3
27
94
2
110
56
7
29
6
1.52
28286--28340
27
2.0
27
96
0
101
54
3
10
30
1.52
28619--28650
2
15.5
2
93
6
55
50
0
3
46
1.17
29549--29578
2
15.0
2
100
0
60
50
0
50
0
1.00
31438--31462
7
3.6
7
100
0
50
12
0
0
88
0.53
33648--33693
3
14.7
3
95
4
74
36
0
0
63
0.95
34827--34860
16
2.1
16
88
0
50
50
2
23
23
1.63
37789--37813
1
25.0
1
100
0
50
0
0
100
0
0.00

Tables:   1

The End!