Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006770.1 Corchorus capsularis cultivar CVL-1 contig06791, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50184

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64--115
26
2.0
26
85
7
70
63
0
3
32
1.12
1578--1653
37
2.1
37
87
0
107
59
7
17
15
1.59
1581--1663
37
2.5
31
72
20
76
59
8
15
16
1.60
1775--1840
30
2.1
32
91
5
109
43
4
21
30
1.72
1869--1913
2
21.0
2
86
13
63
46
0
6
46
1.29
3707--3768
31
2.0
32
84
6
83
30
12
4
51
1.61
4984--5054
24
3.0
24
79
8
101
36
11
15
36
1.83
4956--5102
46
3.2
44
81
12
156
34
9
18
38
1.83
4924--5109
22
8.3
22
75
11
119
33
8
18
39
1.80
5145--6119
22
44.8
21
67
15
294
38
9
16
36
1.81
5564--5615
20
2.6
20
84
0
68
40
7
19
32
1.80
5627--5724
45
2.2
44
83
5
126
43
9
14
32
1.77
5751--5852
23
4.5
23
83
3
118
37
7
14
40
1.75
18307--18371
2
33.0
2
81
9
53
43
0
9
47
1.35
19393--19425
12
2.8
12
90
4
50
21
0
0
78
0.75
21726--21764
5
7.8
5
94
0
69
79
2
17
0
0.84
21726--21772
15
3.1
14
82
11
58
78
2
19
0
0.85
23885--23950
31
2.1
31
91
0
105
24
13
27
34
1.93
24965--25016
25
2.0
26
88
3
79
38
3
0
57
1.17
25851--26372
197
2.6
198
85
2
663
35
15
12
36
1.85
28435--28490
27
2.0
28
93
3
96
8
35
5
50
1.57
30664--30737
31
2.3
32
86
2
96
16
25
25
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30669--30737
32
2.2
31
86
2
93
17
24
24
33
1.96
31703--31728
3
8.7
3
100
0
52
0
34
0
65
0.93
38077--38108
10
3.0
11
90
9
57
18
0
0
81
0.70
38079--38108
5
5.8
5
92
7
51
16
0
0
83
0.65
38328--38373
20
2.2
22
88
7
69
2
21
2
73
1.04

Tables:   1

The End!