Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006771.1 Corchorus capsularis cultivar CVL-1 contig06792, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5301
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:962 original size:15 final size:15

Alignment explanation


    Indices: 942--971  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        932 AAACAAACAC

                           
        942 ATATATACTACATAT
          1 ATATATACTACATAT

                           
        957 ATATATACTACATAT
          1 ATATATACTACATAT

        972 TAATTTTATA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40


Consensus pattern (15 bp):   
ATATATACTACATAT

Found at i:4724 original size:29 final size:27

Alignment explanation


    Indices: 4691--4747  Score: 78
    Period size: 29  Copynumber: 2.0  Consensus size: 27

       4681 AAGGAACCAC

                   *   *                 
       4691 AAAAAATTTTCTCCATAAAATATCTAAAA
          1 AAAAAATCTTCCCCATAAAA-AT-TAAAA

                                       
       4720 AAAAAATCTTCCCCATAAAAATTAAAA
          1 AAAAAATCTTCCCCATAAAAATTAAAA

             
       4747 A
          1 A

       4748 TATTTATCTT


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  27    6  0.23
  28    2  0.08
  29   18  0.69

ACGTcount: A:0.58, C:0.16, G:0.00, T:0.26


Consensus pattern (27 bp):   
AAAAAATCTTCCCCATAAAAATTAAAA
Done.