Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006774.1 Corchorus capsularis cultivar CVL-1 contig06795, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134285

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
301--326
2
13.0
2
100
0
52
50
0
0
50
1.00
8731--8755
12
2.1
12
100
0
50
40
60
0
0
0.97
10447--10496
24
2.2
23
89
7
75
20
8
16
56
1.65
10826--10888
29
2.2
30
88
5
94
42
17
4
34
1.70
12476--12530
28
2.0
28
92
0
92
56
9
10
23
1.62
14624--14687
2
32.0
2
93
0
110
3
46
0
50
1.17
29266--29339
34
2.1
36
87
10
107
22
10
10
55
1.65
29748--29787
21
1.9
21
94
0
71
30
12
5
52
1.60
29714--29826
55
2.1
55
100
0
226
24
14
8
52
1.70
32263--32315
19
2.7
19
76
21
56
62
0
1
35
1.06
32905--32981
30
2.5
31
93
4
129
49
9
7
33
1.63
38352--38409
29
2.0
29
82
0
71
46
22
8
22
1.79
39116--39186
31
2.4
30
81
9
74
26
14
22
36
1.92
40990--41034
19
2.4
19
85
7
56
15
4
26
53
1.61
41001--41047
20
2.4
19
89
10
69
12
2
27
57
1.47
45281--45328
22
2.2
22
85
7
62
27
10
18
43
1.82
45355--45409
21
2.6
21
85
5
76
12
14
25
47
1.80
45736--45783
21
2.3
21
89
3
71
27
16
22
33
1.96
46578--46685
33
3.3
32
83
8
119
11
26
41
20
1.86
47946--48133
77
2.4
77
85
7
238
27
9
20
42
1.83
48345--48394
21
2.4
21
90
6
75
20
14
26
40
1.90
47995--48558
287
2.0
285
84
4
751
32
11
16
38
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51528--51571
17
2.6
17
96
3
81
36
0
13
50
1.42
51653--51682
15
2.0
15
93
0
51
56
0
0
43
0.99
70435--70475
21
1.9
22
85
5
57
41
29
9
19
1.83
78844--78893
15
3.3
15
91
5
66
16
14
10
60
1.59
78856--78893
15
2.5
15
100
0
76
10
13
13
63
1.53
85876--85945
36
1.9
36
91
0
113
41
12
22
22
1.88
86035--86105
32
2.2
32
85
7
92
19
28
4
47
1.68
102392--102567
85
2.1
85
92
1
291
27
22
9
39
1.85
104607--104631
2
12.5
2
100
0
50
48
0
0
52
1.00
104907--104954
2
24.0
2
100
0
96
0
0
50
50
1.00
108198--108448
139
1.8
132
85
8
342
40
10
13
35
1.79
109508--109549
22
1.9
22
95
0
75
14
16
38
30
1.89
110268--110488
120
1.8
125
89
4
353
52
17
13
17
1.75
112806--112873
15
4.6
15
73
14
61
69
0
30
0
0.89
115121--115388
41
6.4
41
78
7
245
23
10
27
38
1.88
115122--115388
83
3.2
83
87
2
383
23
10
27
38
1.88
119713--119761
17
2.9
17
90
0
71
14
24
26
34
1.94
119696--119760
34
1.9
34
87
6
96
13
26
26
33
1.94
133314--133556
35
6.7
35
82
10
258
39
10
16
32
1.83
133389--133556
71
2.4
70
85
9
227
39
9
16
33
1.81

Tables:   1

The End!