Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006776.1 Corchorus capsularis cultivar CVL-1 contig06797, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6460
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35


Found at i:3056 original size:44 final size:44

Alignment explanation


    Indices: 2993--3079  Score: 165
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       2983 CATATAACAT

                                      *                 
       2993 CTTGAATAAAATGAAAGTTAATTAATCACTTCTTAATCACCATC
          1 CTTGAATAAAATGAAAGTTAATTAATAACTTCTTAATCACCATC

                                                       
       3037 CTTGAATAAAATGAAAGTTAATTAATAACTTCTTAATCACCAT
          1 CTTGAATAAAATGAAAGTTAATTAATAACTTCTTAATCACCAT

       3080 TCTTCATGAC


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  44   42  1.00

ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34


Consensus pattern (44 bp):   
CTTGAATAAAATGAAAGTTAATTAATAACTTCTTAATCACCATC
Done.