Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006777.1 Corchorus capsularis cultivar CVL-1 contig06798, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36087

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
146--230
42
2.0
42
93
0
143
28
17
11
42
1.84
1246--1271
13
2.0
13
100
0
52
7
23
53
15
1.67
1836--1887
11
4.5
11
79
9
59
82
1
13
1
0.84
2269--2313
23
2.0
23
83
12
58
37
11
20
31
1.87
3246--3283
20
1.9
20
88
0
58
18
0
7
73
1.06
3857--3881
10
2.5
10
100
0
50
48
20
8
24
1.76
14247--14285
15
2.5
15
84
15
53
79
0
5
15
0.90
15224--15530
35
7.9
37
71
17
194
25
17
21
36
1.94
15229--15408
78
2.3
78
94
1
308
25
16
21
36
1.94
15385--15528
76
1.9
77
83
1
191
24
18
22
34
1.96
15737--15821
42
2.0
42
93
0
143
28
17
11
42
1.84
17853--17897
23
2.0
23
83
12
58
37
11
20
31
1.87
29249--29291
21
2.0
21
82
8
52
30
23
18
27
1.98
32264--32592
164
2.0
164
100
0
658
29
15
26
27
1.96
32814--32874
30
2.0
30
87
6
88
34
16
4
44
1.69
33561--33659
32
3.1
32
81
8
121
23
25
32
19
1.97
33723--33821
32
3.1
32
82
2
119
23
20
29
27
1.99
33562--33864
162
1.9
161
84
3
403
27
18
27
26
1.98
33989--34092
32
3.2
32
89
2
156
21
35
22
21
1.96
33989--34108
64
1.9
64
84
10
165
23
34
22
20
1.97
34006--34108
32
3.2
31
82
8
118
24
33
22
20
1.97

Tables:   1

The End!