Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000678.1 Corchorus capsularis cultivar CVL-1 contig00678, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 611

Length: 1019
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33


Found at i:722 original size:28 final size:26

Alignment explanation


    Indices: 660--715  Score: 78
    Period size: 28  Copynumber: 2.1  Consensus size: 26

        650 AGTTAAATTT

                                        
        660 AAAAAACTTTAACATTGAAGCTAATAAA
          1 AAAAAACTTTAACATTGAA-C-AATAAA

                                       
        688 AAAAAACTTTAACATTGAA-AAGTAAA
          1 AAAAAACTTTAACATTGAACAA-TAAA

              
        714 AA
          1 AA

        716 CATAAACAAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
  25    2  0.07
  26    6  0.22
  28   19  0.70

ACGTcount: A:0.61, C:0.09, G:0.07, T:0.23


Consensus pattern (26 bp):   
AAAAAACTTTAACATTGAACAATAAA
Done.