Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006780.1 Corchorus capsularis cultivar CVL-1 contig06801, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67730

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--71
11
6.5
11
79
15
74
40
0
0
59
0.97
18--61
9
4.8
9
80
5
52
38
0
0
61
0.96
389--428
21
1.9
21
94
0
71
20
37
32
10
1.85
1519--1588
25
2.8
25
89
4
97
22
27
7
42
1.79
4639--4681
2
21.5
2
85
0
59
46
2
4
46
1.36
6569--6632
30
2.1
32
94
5
114
42
4
25
28
1.75
12507--12585
16
4.9
16
75
14
74
34
35
18
11
1.87
12500--12583
32
2.6
32
88
0
123
32
36
19
11
1.88
12694--12740
21
2.2
21
92
0
76
29
8
6
55
1.55
13187--13238
7
6.9
7
79
16
59
32
42
23
1
1.65
13193--13280
16
5.6
16
78
8
99
37
37
19
5
1.75
15457--15494
18
2.1
19
90
5
60
28
13
39
18
1.88
16792--16829
18
2.1
19
90
5
60
18
39
13
28
1.88
17470--17531
30
2.1
30
96
0
115
25
24
4
45
1.73
19490--19567
38
2.1
38
100
0
156
47
23
0
29
1.52
33885--33915
7
4.4
7
91
0
53
0
9
0
90
0.46
33885--33918
13
2.5
13
90
4
50
0
11
0
88
0.52
36577--36611
18
1.9
18
88
0
52
22
20
34
22
1.97
37598--37628
16
1.9
16
93
0
53
64
0
6
29
1.18
47928--47958
10
3.1
10
100
0
62
32
19
9
38
1.84
55782--55816
11
3.2
11
83
0
52
77
17
5
0
0.96
58130--58162
14
2.4
14
95
5
59
27
39
21
12
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61180--61231
16
3.5
16
68
26
51
25
13
3
57
1.53
62549--62578
13
2.2
14
94
5
53
66
26
6
0
1.16
65818--65847
15
2.0
15
100
0
60
26
6
33
33
1.83
67498--67575
29
2.7
29
93
2
138
15
28
17
38
1.91

Tables:   1

The End!