Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006782.1 Corchorus capsularis cultivar CVL-1 contig06803, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49938

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4483--4507
2
12.5
2
100
0
50
52
0
0
48
1.00
4737--4857
42
2.7
43
83
7
154
40
12
25
21
1.88
8170--8241
28
2.6
28
77
0
81
25
23
16
34
1.95
15506--15582
30
2.5
30
89
2
109
28
9
24
37
1.86
15506--15600
30
3.1
30
84
4
84
27
7
24
41
1.81
26217--26260
3
15.0
3
95
4
81
65
0
0
34
0.93
26210--26260
23
2.2
23
93
6
86
64
1
0
33
1.05
26221--26260
20
2.0
20
100
0
80
65
0
0
35
0.93
26390--26418
6
4.8
6
100
0
58
34
0
31
34
1.58
26981--27083
35
2.9
35
86
0
143
35
15
8
39
1.78
27030--27149
52
2.3
52
81
5
136
36
15
10
38
1.80
27077--27244
73
2.3
73
82
3
203
35
16
7
40
1.77
27152--27672
56
9.4
54
88
3
652
37
16
7
39
1.76
27105--27218
35
3.2
34
73
11
102
34
20
7
37
1.82
27259--27298
21
1.9
21
89
0
62
40
17
2
40
1.63
27152--27671
112
4.7
112
90
1
762
37
16
7
39
1.76
27318--27411
21
4.8
21
70
17
67
37
15
5
41
1.70
27485--27524
21
1.9
21
84
0
53
37
12
2
47
1.55
27533--27613
21
4.2
20
67
23
57
38
17
7
37
1.78
27615--27672
16
3.4
16
73
13
53
39
13
5
41
1.67
27746--27838
38
2.5
37
87
5
125
27
16
5
50
1.66
32275--32601
168
1.9
168
100
0
654
26
22
24
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40129--40169
21
2.1
20
82
13
50
24
17
17
41
1.89
41844--41870
6
4.5
6
100
0
54
66
0
0
33
0.92
45421--45465
3
14.0
3
82
13
54
4
28
0
66
1.11
47274--47407
31
4.5
31
76
7
123
17
22
26
34
1.96
47312--47398
27
3.1
27
81
12
111
16
21
25
36
1.94
47770--47801
15
2.1
15
100
0
64
50
12
21
15
1.77
48758--48792
10
3.3
10
88
11
52
0
14
0
85
0.59
48760--48790
14
2.3
13
94
5
53
0
9
0
90
0.46

Tables:   1

The End!