Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006783.1 Corchorus capsularis cultivar CVL-1 contig06804, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47517

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1125--1185
6
10.2
6
81
15
56
0
9
16
73
1.08
1144--1185
11
3.8
11
90
0
66
0
7
16
76
1.00
1144--1189
17
2.8
16
81
18
67
0
6
17
76
1.00
2833--2872
3
13.3
3
100
0
80
35
0
0
65
0.93
7799--7921
60
2.0
60
100
0
246
39
20
22
17
1.93
24164--24213
8
5.2
10
81
18
54
32
2
20
46
1.62
24187--24218
8
4.0
8
100
0
64
37
0
25
37
1.56
32197--32224
2
14.0
2
100
0
56
50
0
0
50
1.00
33405--33443
17
2.4
16
91
4
60
61
12
2
23
1.43
36284--36542
138
1.9
138
99
0
509
25
16
15
42
1.87

Tables:   1

The End!