genome.fa.s6790.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006790.1 Corchorus capsularis cultivar CVL-1 contig06811, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70435

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3224--3295	30	2.4	31	83	2	101	47	9	18	25	1.78
3287--3361	22	3.4	23	82	8	86	53	5	21	20	1.65
3346--3467	34	3.5	33	74	10	111	49	9	15	26	1.74
3345--3482	71	1.9	71	89	0	213	47	9	15	26	1.76
3476--3541	33	2.0	32	85	8	89	48	6	19	25	1.72
3528--3616	26	3.3	26	65	32	69	49	6	17	25	1.71
3540--3625	26	3.2	26	63	27	61	50	6	19	23	1.72
3529--3763	55	4.3	55	96	1	400	48	7	18	25	1.73
3611--3700	29	3.2	29	64	20	82	47	8	18	24	1.77
3978--4514	21	24.5	22	69	17	196	54	5	19	20	1.63
3948--4514	22	25.8	22	69	15	225	54	5	19	20	1.63
4211--4308	35	2.8	34	90	0	115	56	3	23	17	1.55
3983--4257	149	1.8	149	80	6	333	55	5	20	19	1.62
4288--4392	49	2.1	50	85	7	142	58	3	17	20	1.54
4573--4625	27	1.9	27	84	3	70	54	1	26	16	1.53
10329--10901	202	2.8	201	90	1	896	34	16	16	32	1.91
11634--11725	48	1.9	48	93	0	157	47	6	23	21	1.74
11634--11727	23	4.0	24	70	9	68	48	6	23	21	1.72
18935--18959	10	2.5	10	100	0	50	28	8	24	40	1.83
19079--19115	19	2.0	18	89	5	56	27	21	8	43	1.80
20347--20404	29	2.0	29	100	0	116	48	17	17	17	1.82
27457--27481	10	2.5	10	100	0	50	28	8	24	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32560--32602	13	3.2	13	81	15	52	60	6	0	32	1.23
42188--42249	18	3.5	19	70	14	60	33	19	9	37	1.84
42151--42444	35	8.8	31	79	13	293	30	20	10	38	1.86
43161--43218	29	2.0	29	86	3	80	44	20	0	34	1.52
43250--43327	30	2.6	30	77	0	84	41	10	1	47	1.46
44851--44890	20	2.0	20	100	0	80	30	15	35	20	1.93
49357--49390	17	2.0	17	100	0	68	29	17	23	29	1.97
49429--49477	15	3.1	15	91	5	71	34	0	20	44	1.52
52989--53016	13	2.2	13	100	0	56	64	0	14	21	1.29
65935--66202	87	3.0	87	91	2	412	27	17	24	31	1.97
67691--67724	18	2.0	18	88	11	54	35	14	32	17	1.91
70206--70235	14	2.1	14	100	0	60	66	0	13	20	1.24

Tables:   1

The End!