Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006792.1 Corchorus capsularis cultivar CVL-1 contig06813, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41756

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10--34
2
12.5
2
100
0
50
48
0
0
52
1.00
378--460
27
3.0
28
81
13
91
50
3
6
39
1.44
559--598
4
10.0
4
100
0
80
50
25
0
25
1.50
3086--3152
31
2.2
31
92
5
111
49
10
16
23
1.77
3271--3411
31
4.6
31
83
3
160
29
15
14
40
1.87
3298--3411
60
1.9
60
85
3
158
28
15
14
40
1.88
4317--4372
3
18.7
3
100
0
112
33
0
0
66
0.92
4470--4550
31
2.6
31
90
5
130
38
9
16
35
1.81
4668--4734
31
2.2
31
92
5
111
20
19
11
47
1.81
8571--8791
120
1.8
120
100
0
442
33
23
14
27
1.94
10603--10632
12
2.4
13
94
5
53
86
0
13
0
0.57
10615--10660
20
2.2
20
92
3
74
78
0
17
4
0.91
10597--10660
11
6.1
11
75
15
64
78
0
17
4
0.92
17181--17241
28
2.2
28
84
0
77
50
14
0
34
1.43
17196--17263
28
2.4
28
87
5
91
48
17
0
33
1.48
25652--25770
42
2.9
41
87
4
170
41
15
14
28
1.87
28989--29021
2
16.5
2
100
0
66
48
0
0
51
1.00
29160--29192
16
2.1
16
100
0
66
48
27
6
18
1.71
41056--41082
3
9.0
3
100
0
54
66
0
33
0
0.92

Tables:   1

The End!