Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006793.1 Corchorus capsularis cultivar CVL-1 contig06814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29632

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2182--2417
131
1.8
130
86
0
312
34
18
6
40
1.76
3245--3274
2
15.0
2
100
0
60
50
0
0
50
1.00
3274--3306
2
16.5
2
93
0
57
0
3
48
48
1.17
7676--7784
42
2.6
42
81
7
114
37
14
24
22
1.92
7785--8388
37
15.9
37
81
12
676
46
8
19
25
1.78
7785--8388
147
4.0
148
84
11
773
46
8
19
25
1.78
8089--8127
18
2.2
18
95
0
69
41
7
20
30
1.80
8052--8164
55
2.1
55
98
0
217
44
7
19
28
1.79
7978--8238
129
2.0
129
96
0
486
47
8
18
26
1.76
8015--8201
92
2.0
92
96
0
347
45
8
19
26
1.77
8327--8536
74
2.8
73
93
2
348
43
8
22
25
1.81
8643--8757
36
3.2
36
85
4
144
40
10
20
29
1.85
9725--9818
41
2.3
41
83
3
118
27
8
21
42
1.81
9788--9878
27
3.4
26
65
22
62
26
7
23
42
1.80
9939--10021
42
2.0
42
85
0
112
27
16
7
48
1.73
10473--10520
21
2.2
23
78
14
57
60
2
14
22
1.45
10711--10754
15
2.9
15
100
0
88
34
20
18
27
1.96
15241--15275
17
2.1
17
88
0
52
37
8
28
25
1.85
15527--15611
34
2.5
33
81
9
84
56
5
3
34
1.41
19073--19110
16
2.4
16
95
0
67
21
13
7
57
1.60
19262--19318
26
2.2
26
90
3
89
26
15
5
52
1.64
19908--19937
13
2.3
13
94
0
51
60
0
6
33
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21600--21637
2
19.5
2
89
5
60
47
0
2
50
1.15
23844--24365
22
23.6
22
69
12
169
38
9
15
36
1.80
23844--24058
66
3.3
65
80
5
229
39
8
14
37
1.77
24047--24102
21
2.6
22
80
11
62
42
10
17
28
1.83
24187--24237
26
2.0
26
96
0
93
35
13
15
35
1.87
24288--24463
97
1.8
97
82
4
230
38
8
14
38
1.77
24429--24488
22
2.7
22
82
5
68
45
11
5
38
1.63
25007--25210
106
1.9
106
100
0
408
25
11
26
36
1.90

Tables:   1

The End!