Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006796.1 Corchorus capsularis cultivar CVL-1 contig06817, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17472
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:1191 original size:22 final size:23

Alignment explanation


    Indices: 1156--1201  Score: 67
    Period size: 22  Copynumber: 2.0  Consensus size: 23

       1146 ATTTCCCGTG

                *                  
       1156 TTTTGTGTATATTTTCCGTGGAC
          1 TTTTATGTATATTTTCCGTGGAC

                               *   
       1179 TTTTATGT-TATTTTCCGTTGAC
          1 TTTTATGTATATTTTCCGTGGAC

             
       1201 T
          1 T

       1202 ACCCTATTTT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  22   14  0.67
  23    7  0.33

ACGTcount: A:0.13, C:0.13, G:0.17, T:0.57


Consensus pattern (23 bp):   
TTTTATGTATATTTTCCGTGGAC

Found at i:2049 original size:17 final size:17

Alignment explanation


    Indices: 2027--2067  Score: 55
    Period size: 17  Copynumber: 2.4  Consensus size: 17

       2017 ACCCATATAT

                             
       2027 ATATATAGATTATCCAA
          1 ATATATAGATTATCCAA

                   *      * *
       2044 ATATATATATTATCTAT
          1 ATATATAGATTATCCAA

                   
       2061 ATATATA
          1 ATATATA

       2068 AGGCAAATAT


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   21  1.00

ACGTcount: A:0.46, C:0.07, G:0.02, T:0.44


Consensus pattern (17 bp):   
ATATATAGATTATCCAA
Done.