Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006797.1 Corchorus capsularis cultivar CVL-1 contig06818, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63713

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47--126
36
2.1
38
84
6
101
23
8
6
61
1.48
4059--4177
36
3.4
34
75
17
120
28
18
6
46
1.74
4080--4187
32
3.2
32
75
14
110
29
17
5
47
1.70
4194--4498
36
8.6
36
81
4
350
24
19
10
45
1.81
4194--4498
107
2.8
106
82
3
373
24
19
10
45
1.81
4194--4498
71
4.3
72
86
6
433
24
19
10
45
1.81
4491--4651
11
13.7
11
79
11
160
10
22
9
56
1.63
4491--4651
24
6.9
22
80
12
160
10
22
9
56
1.63
4491--4652
35
4.6
34
80
11
175
10
22
9
56
1.62
4592--4632
12
2.9
15
79
20
61
7
24
7
60
1.48
4709--4906
36
5.5
36
91
3
301
28
13
11
46
1.77
5010--5232
34
6.3
35
82
7
263
26
20
8
45
1.79
5010--5232
74
3.1
68
85
6
248
26
20
8
45
1.79
5010--5232
108
2.1
105
88
4
322
26
20
8
45
1.79
5201--5345
40
3.6
40
76
10
127
27
15
9
46
1.77
20299--20570
51
5.3
51
86
0
346
40
16
5
37
1.72
23217--23273
13
4.2
13
70
12
51
54
14
7
24
1.64
23373--23459
27
3.2
27
85
9
115
48
21
13
16
1.80
23373--23470
28
3.5
28
89
6
139
48
20
13
17
1.80
25005--25050
22
2.1
22
95
0
83
43
15
13
28
1.83
26635--26999
48
7.6
48
85
0
460
13
24
21
40
1.90
28228--28276
21
2.3
21
82
6
55
14
24
16
44
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31130--31178
21
2.3
21
85
0
62
12
36
24
26
1.91
37644--37668
12
2.1
12
100
0
50
32
8
24
36
1.84
39333--39366
9
3.7
9
88
7
50
88
0
0
11
0.52
39333--39366
10
3.3
10
95
4
59
88
0
0
11
0.52
40704--40743
18
2.2
19
90
4
64
32
17
15
35
1.91
41030--41145
33
3.6
31
75
10
101
12
37
32
17
1.86
48443--48472
6
5.0
6
100
0
60
33
16
0
50
1.46
49365--49401
13
2.8
13
91
4
56
67
0
0
32
0.91
49372--49417
20
2.4
19
85
7
65
63
2
0
34
1.07
50199--50241
21
2.0
21
100
0
86
13
20
32
32
1.92
51973--52001
11
2.6
11
100
0
58
55
6
0
37
1.27
57234--57432
35
5.7
35
95
0
344
39
10
18
31
1.84

Tables:   1

The End!