Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006798.1 Corchorus capsularis cultivar CVL-1 contig06819, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15226
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31


Found at i:12572 original size:44 final size:44

Alignment explanation


    Indices: 12514--12605  Score: 184
    Period size: 44  Copynumber: 2.1  Consensus size: 44

      12504 TTATAAACAC

                                                        
      12514 CATGGATCATAGATCAAAATATATCAATTTATAAGCACCATAAA
          1 CATGGATCATAGATCAAAATATATCAATTTATAAGCACCATAAA

                                                        
      12558 CATGGATCATAGATCAAAATATATCAATTTATAAGCACCATAAA
          1 CATGGATCATAGATCAAAATATATCAATTTATAAGCACCATAAA

                
      12602 CATG
          1 CATG

      12606 TCTTTGACAA


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   48  1.00

ACGTcount: A:0.47, C:0.16, G:0.10, T:0.27


Consensus pattern (44 bp):   
CATGGATCATAGATCAAAATATATCAATTTATAAGCACCATAAA
Done.