Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006800.1 Corchorus capsularis cultivar CVL-1 contig06821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44871

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4872--4906
17
2.1
17
89
5
54
68
5
25
0
1.11
9104--9129
2
13.0
2
100
0
52
50
0
0
50
1.00
31496--31583
15
5.9
15
67
10
54
10
26
26
37
1.88
31501--31608
30
3.6
30
89
0
153
10
25
26
37
1.88
32465--32489
10
2.5
10
100
0
50
48
20
8
24
1.76
33755--33808
25
2.1
26
89
3
83
37
7
14
40
1.74
33874--33955
43
1.9
43
84
0
110
25
9
3
60
1.44
41057--41113
18
3.2
18
80
5
62
12
17
43
26
1.84
41057--41126
36
1.9
36
88
0
104
12
20
42
24
1.86
41065--41183
18
6.6
18
75
5
89
12
20
42
25
1.87
41432--41467
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!