genome.fa.s6806.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006806.1 Corchorus capsularis cultivar CVL-1 contig06827, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31893

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1068	144	7.4	144	92	1	1703	31	13	25	29	1.94
49--415	72	5.1	72	61	16	184	31	14	24	29	1.94
3743--3840	43	2.3	43	82	8	110	39	14	9	36	1.78
5966--6008	15	2.9	15	85	0	59	18	20	32	27	1.96
7292--7344	27	2.1	26	89	10	83	56	9	7	26	1.57
7190--7581	195	2.0	195	98	0	757	39	12	17	31	1.87
10210--10251	22	1.9	22	90	0	66	28	14	14	42	1.84
10388--10441	28	1.9	28	100	0	108	27	18	7	46	1.76
13735--14448	48	15.0	48	80	4	737	12	23	22	40	1.88
13736--14351	193	3.2	192	87	3	850	12	23	22	41	1.88
18213--18300	35	2.6	34	87	3	131	43	7	18	30	1.78
18240--18355	55	2.1	55	88	3	171	39	8	19	31	1.82
18302--18891	35	17.0	35	85	5	725	38	10	19	31	1.86
24006--24150	32	4.4	32	83	10	193	27	16	6	49	1.69
24006--24150	68	2.2	64	86	7	193	27	16	6	49	1.69
24172--24385	105	2.0	106	94	2	378	24	22	9	42	1.83
24149--24385	36	6.7	36	84	4	297	24	22	10	42	1.84
24377--24593	11	19.7	10	71	17	87	20	17	9	52	1.71
24377--24548	22	7.8	21	75	10	121	22	17	9	50	1.75
24385--24548	33	4.9	33	80	7	188	22	17	9	50	1.74
24520--24619	22	4.5	22	77	12	80	12	22	8	58	1.59
24562--24610	11	4.1	13	77	15	52	10	26	6	57	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24675--24938	36	7.4	36	86	1	336	28	12	12	46	1.78
29633--29677	6	7.8	6	83	16	60	86	0	13	0	0.57
29630--29676	11	4.4	11	87	10	62	87	0	12	0	0.55
29631--29682	19	2.8	18	86	13	79	86	0	13	0	0.57
29631--29682	25	2.1	25	89	7	79	86	0	13	0	0.57
30761--30864	35	3.0	35	78	2	102	23	18	18	40	1.91
30914--31011	36	2.8	35	84	9	119	19	18	29	32	1.96

Tables:   1

The End!