genome.fa.s6807.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006807.1 Corchorus capsularis cultivar CVL-1 contig06828, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71094

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1047--1073	1	27.0	1	100	0	54	100	0	0	0	0.00
2669--2783	35	3.4	34	78	9	137	44	9	15	30	1.79
2703--2769	31	2.3	27	77	18	80	46	8	14	29	1.76
2692--2854	86	1.9	87	87	3	238	41	8	17	33	1.80
2755--2804	24	2.2	24	86	10	70	44	6	14	36	1.69
2785--3333	35	16.0	35	79	9	544	38	10	18	33	1.84
2785--3333	71	8.0	69	79	9	552	38	10	18	33	1.84
2973--3028	29	1.9	29	100	0	112	35	8	17	37	1.82
2785--3333	137	4.0	139	80	11	469	38	10	18	33	1.84
4302--4460	53	3.0	53	100	0	318	16	20	24	37	1.93
6068--6130	29	2.1	29	82	2	72	38	17	3	41	1.65
6760--6809	26	1.9	27	88	8	77	32	6	10	52	1.59
11688--11713	6	4.3	6	100	0	52	34	15	34	15	1.89
16523--16616	22	4.5	22	67	24	76	35	11	9	43	1.74
16487--16615	62	2.1	62	95	2	233	34	13	10	42	1.77
16487--16631	62	2.3	62	89	4	186	35	13	9	41	1.78
16643--16687	22	2.1	22	87	4	65	31	11	4	53	1.56
16831--16887	23	2.5	22	75	11	53	40	15	10	33	1.82
16898--16978	23	3.5	23	83	5	101	39	14	7	38	1.75
16894--17146	44	5.8	44	74	13	170	35	14	9	40	1.78
16894--17147	22	11.7	22	69	15	102	35	14	9	40	1.78
21005--21058	28	2.0	27	82	10	65	12	11	29	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21565--21618	23	2.4	22	81	3	54	3	22	5	68	1.26
24313--24364	22	2.4	22	83	3	70	38	11	7	42	1.70
24701--24768	31	2.2	32	81	10	86	42	4	16	36	1.68
24708--24769	31	2.0	31	87	6	90	41	3	19	35	1.67
24647--24885	118	2.0	118	95	0	433	47	3	13	35	1.59
24819--24885	31	2.1	32	81	10	84	46	4	14	34	1.65
24826--24891	31	2.1	31	86	5	89	46	4	18	30	1.68
26220--26525	156	2.0	153	96	3	564	39	10	18	31	1.85
27609--27636	14	2.0	14	100	0	56	57	0	35	7	1.26
29998--30110	53	2.1	54	85	8	160	41	5	21	31	1.75
35297--35352	22	2.5	24	91	8	91	37	23	0	39	1.55
35456--35486	12	2.6	12	100	0	62	67	0	0	32	0.91
45159--45223	31	2.1	31	97	0	121	20	13	23	43	1.87
45603--45647	21	2.1	22	91	4	74	17	40	8	33	1.81
45794--45861	26	2.6	26	90	0	109	52	10	1	35	1.44
45909--46386	167	2.9	167	82	4	579	29	16	16	37	1.91
46687--46712	9	2.9	9	100	0	52	23	46	23	7	1.78
59804--60078	109	2.5	109	94	4	464	48	1	11	38	1.48
61136--61186	23	2.2	22	83	10	66	27	41	23	7	1.82
61182--61263	16	5.2	15	78	7	83	41	36	14	7	1.74

Tables:   1

The End!