Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006813.1 Corchorus capsularis cultivar CVL-1 contig06834, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12839
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33


Found at i:3044 original size:9 final size:9

Alignment explanation


    Indices: 3014--3047  Score: 50
    Period size: 9  Copynumber: 3.7  Consensus size: 9

       3004 CTGGTCGAAA

                     
       3014 ATTTTTTTT
          1 ATTTTTTTT

                      
       3023 ATTTTATTTT
          1 ATTTT-TTTT

                   * 
       3033 ATTTTTTAT
          1 ATTTTTTTT

                  
       3042 ATTTTT
          1 ATTTTT

       3048 CGATATAACT


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
   9   14  0.61
  10    9  0.39

ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82


Consensus pattern (9 bp):   
ATTTTTTTT

Found at i:4150 original size:33 final size:34

Alignment explanation


    Indices: 4113--4219  Score: 105
    Period size: 33  Copynumber: 3.2  Consensus size: 34

       4103 CGCCAAGCGA

                                  *            
       4113 TGGCCGGTTG-TGGCCGGACATGTCC-ATGTCGCG
          1 TGGCCGGTTGATGGCCGGACATCTCCGA-GTCGCG

                              *               
       4146 TGGCCGG-TGATGGCCGGGCATCTCCGAGTCGCG
          1 TGGCCGGTTGATGGCCGGACATCTCCGAGTCGCG

                      * *     * *     *      *
       4179 TGGCCGG-TGTTTGCCGGGCTTCTCCAAGTCGCA
          1 TGGCCGGTTGATGGCCGGACATCTCCGAGTCGCG

                    
       4212 TGGCCGGT
          1 TGGCCGGT

       4220 CACTCGCGCC


Statistics
Matches: 64,  Mismatches: 7, Indels: 5
        0.84            0.09        0.07

Matches are distributed among these distances:
  32    2  0.03
  33   61  0.95
  34    1  0.02

ACGTcount: A:0.08, C:0.29, G:0.39, T:0.23


Consensus pattern (34 bp):   
TGGCCGGTTGATGGCCGGACATCTCCGAGTCGCG
Done.