Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006815.1 Corchorus capsularis cultivar CVL-1 contig06836, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23202

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3402--3478
29
2.7
29
100
0
154
48
12
9
29
1.73
3551--3584
2
18.0
2
88
11
54
47
0
0
52
1.00
3592--3625
17
2.0
17
100
0
68
35
17
0
47
1.48
4885--5101
22
9.8
22
68
10
75
35
13
11
40
1.80
5170--5248
26
3.0
26
80
9
81
20
18
22
37
1.94
7912--7938
2
13.5
2
100
0
54
0
48
0
51
1.00
10453--10537
23
3.7
23
85
1
109
38
14
5
41
1.70
10434--10660
22
10.5
22
72
11
87
36
14
8
40
1.77
10782--10934
66
2.3
65
79
4
164
33
15
9
41
1.80
10782--11001
22
10.0
22
72
7
108
33
15
10
40
1.80
11079--11131
22
2.4
21
72
9
52
35
20
9
33
1.85
11215--11398
22
8.3
22
74
10
106
38
19
9
33
1.83
11222--11365
44
3.2
44
84
9
168
37
18
10
33
1.85
11536--11567
6
5.3
6
100
0
64
15
0
34
50
1.45
11588--11625
19
2.0
20
85
15
53
63
2
5
28
1.30
13578--13635
29
2.0
27
84
15
73
60
12
8
18
1.57
13798--13862
30
2.1
31
91
2
105
47
4
18
29
1.68
14252--14318
32
2.1
32
86
8
93
47
4
19
28
1.68
18375--18429
27
2.0
28
85
3
76
9
25
7
58
1.55
20068--20279
60
3.7
60
74
17
245
34
19
19
25
1.96
20172--20278
31
3.5
30
74
14
112
33
20
20
25
1.97
20057--20272
108
2.0
108
97
0
405
34
18
19
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20309--20414
31
3.5
30
72
14
101
26
19
18
34
1.95
20685--20730
20
2.2
21
92
3
76
26
6
17
50
1.70
20811--20862
15
3.5
15
74
10
52
38
7
15
38
1.76
20945--20987
3
14.3
3
100
0
86
67
0
0
32
0.91
21186--21225
2
20.0
2
94
0
62
45
0
0
55
0.99
22058--22122
32
2.1
31
97
2
121
30
27
12
29
1.93

Tables:   1

The End!