Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006816.1 Corchorus capsularis cultivar CVL-1 contig06837, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25343

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6613--6654
22
1.9
22
90
0
66
45
4
9
40
1.58
8088--8116
2
15.0
2
92
7
51
48
0
0
51
1.00
10331--10386
29
2.0
28
85
3
76
14
28
19
37
1.91
13290--13332
23
1.9
23
90
4
70
16
18
30
34
1.93
22630--22692
29
2.1
31
85
5
85
31
12
3
52
1.55
23190--23426
124
1.9
124
100
0
474
35
18
11
33
1.88
23475--23581
44
2.4
43
81
9
119
38
10
15
35
1.82
23473--23635
22
7.3
22
69
5
85
34
8
17
39
1.81
23758--23810
22
2.5
22
84
9
65
39
7
13
39
1.73
23834--24001
22
7.6
22
71
10
103
42
10
11
35
1.77
23869--23932
21
2.8
23
81
13
78
48
9
7
34
1.64
24202--24298
22
4.4
22
67
25
62
40
9
17
32
1.81
24202--24298
44
2.2
44
82
10
110
40
9
17
32
1.81
24326--24389
25
2.6
25
85
4
78
40
6
12
40
1.68
24311--24389
23
3.4
22
73
11
59
41
7
11
39
1.70
24396--24438
22
2.0
22
90
0
68
34
13
16
34
1.88
24481--24534
22
2.4
23
78
3
56
31
14
18
35
1.91
24526--24698
22
7.9
22
67
11
86
41
10
14
34
1.80

Tables:   1

The End!