Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006822.1 Corchorus capsularis cultivar CVL-1 contig06843, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10392
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30


Found at i:2365 original size:42 final size:42

Alignment explanation


    Indices: 2318--2399  Score: 128
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       2308 CCCGGATGGC

                            **    *                   
       2318 CCATGCGATGGCCGGTTGTGGCTGGTTGCTACATGCGATGTT
          1 CCATGCGATGGCCGGTCATGGCCGGTTGCTACATGCGATGTT

                                          *         
       2360 CCATGCGATGGCCGGTCATGGCCGGTTGCTCCATGCGATG
          1 CCATGCGATGGCCGGTCATGGCCGGTTGCTACATGCGATG

       2400 GTGGCCGGTC


Statistics
Matches: 36,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  42   36  1.00

ACGTcount: A:0.12, C:0.26, G:0.35, T:0.27


Consensus pattern (42 bp):   
CCATGCGATGGCCGGTCATGGCCGGTTGCTACATGCGATGTT
Done.