Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006826.1 Corchorus capsularis cultivar CVL-1 contig06847, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2867
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30


Found at i:271 original size:6 final size:6

Alignment explanation


    Indices: 260--290  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        250 ATAATTGCTA

                                                 
        260 TAGATT TAGATT TAGATT TAGATT TA-ATT TA
          1 TAGATT TAGATT TAGATT TAGATT TAGATT TA

        291 CTTTGCTTAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    5  0.20
   6   20  0.80

ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52


Consensus pattern (6 bp):   
TAGATT

Found at i:1707 original size:15 final size:15

Alignment explanation


    Indices: 1687--1729  Score: 68
    Period size: 15  Copynumber: 2.9  Consensus size: 15

       1677 CCTTGCTAAG

                           
       1687 CCAGAAGATGAGCCA
          1 CCAGAAGATGAGCCA

                  *        
       1702 CCAGAAAATGAGCCA
          1 CCAGAAGATGAGCCA

             *           
       1717 CAAGAAGATGAGC
          1 CCAGAAGATGAGC

       1730 AACTTGGATA


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   25  1.00

ACGTcount: A:0.44, C:0.23, G:0.26, T:0.07


Consensus pattern (15 bp):   
CCAGAAGATGAGCCA
Done.