genome.fa.s6828.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006828.1 Corchorus capsularis cultivar CVL-1 contig06849, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74783

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1536--1567	11	2.9	11	90	0	55	43	18	0	37	1.51
4807--4840	6	5.7	6	89	0	50	0	61	17	20	1.34
6060--6089	14	2.2	14	94	5	53	60	6	0	33	1.23
10984--11022	20	2.0	20	85	10	53	28	23	28	20	1.99
11009--11043	6	6.0	6	93	6	63	17	34	34	14	1.90
14956--15072	48	2.4	48	88	2	182	16	0	55	27	1.47
14982--15181	81	2.5	81	86	0	265	20	1	52	26	1.56
15120--15184	33	2.0	33	84	0	85	20	1	47	30	1.59
21521--21569	24	2.0	24	100	0	98	46	28	12	12	1.77
24622--24959	41	8.4	41	70	21	241	17	23	2	55	1.55
24638--24947	7	46.1	7	64	19	108	17	23	2	56	1.54
24698--24781	27	3.4	26	72	24	83	17	22	3	55	1.57
24712--24754	19	2.3	19	87	0	59	16	23	4	55	1.59
24690--24782	46	2.0	47	91	2	152	17	22	3	56	1.54
24737--24811	33	2.2	33	90	6	116	17	26	2	53	1.57
24804--24906	19	5.3	19	67	23	61	15	26	1	56	1.50
24578--24936	79	4.6	78	85	10	439	16	25	2	54	1.55
24772--24879	46	2.4	47	81	10	127	16	27	1	53	1.53
24816--24890	33	2.2	33	90	6	116	17	24	2	56	1.54
24850--24935	45	1.9	44	88	9	129	16	25	2	55	1.53
24816--24953	33	4.1	34	75	16	112	17	23	2	56	1.54
24651--24936	79	3.6	79	91	4	443	16	24	2	55	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24938--25169	44	5.4	44	76	9	156	21	21	4	51	1.66
24863--25139	22	12.8	22	74	13	229	20	22	3	53	1.62
25352--25519	55	3.1	55	85	1	230	23	17	7	51	1.70
26133--26329	51	3.9	51	83	5	256	38	15	3	43	1.64
28442--28523	23	3.2	26	64	17	62	48	6	14	30	1.68
28409--28536	52	2.4	52	89	1	184	44	6	16	32	1.73
28442--28526	25	3.3	25	65	18	66	49	5	15	29	1.68
29082--29152	28	2.6	26	80	12	79	45	18	18	18	1.86
29083--29163	27	2.9	28	83	5	85	40	19	20	18	1.91
30752--30852	36	2.8	36	93	0	166	25	21	8	43	1.82
30848--31138	41	7.1	41	94	0	487	23	19	9	47	1.78
31143--31842	37	18.9	37	84	8	768	26	18	8	46	1.77
31127--31842	74	9.7	74	88	3	962	26	18	7	46	1.77
33816--33850	14	2.4	14	90	4	52	0	20	0	80	0.72
33817--33866	21	2.4	21	90	9	77	0	20	0	80	0.72
34054--34115	30	2.0	31	84	3	81	45	16	14	24	1.84
42779--42820	2	23.0	2	81	18	56	47	0	0	52	1.00
44527--44565	18	2.2	18	100	0	78	38	15	10	35	1.81
45512--45549	14	3.0	13	88	11	53	50	0	2	47	1.15
47509--47767	103	2.5	105	88	6	377	42	9	8	39	1.68
57679--57703	13	1.9	13	100	0	50	84	0	16	0	0.63
60283--60309	12	2.2	12	100	0	54	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60379--60450	11	5.4	15	66	25	54	31	1	12	54	1.47
60383--60450	26	2.6	26	95	0	118	33	1	11	52	1.47
60465--60508	17	2.5	19	72	24	51	43	0	22	34	1.54
61224--61291	20	3.4	21	76	15	72	26	22	11	39	1.88
61231--61288	10	6.0	10	70	22	52	27	22	10	39	1.86
63388--63776	156	2.5	156	91	0	618	31	14	20	33	1.92
64900--64935	12	2.8	13	87	4	56	25	22	13	38	1.91
65104--65128	10	2.5	10	100	0	50	36	24	8	32	1.84
66513--66562	12	4.0	12	87	7	73	26	24	14	36	1.93
70420--70456	2	18.5	2	100	0	74	51	0	0	48	1.00
74572--74760	51	3.9	50	75	14	196	37	3	18	40	1.69

Tables:   1

The End!