Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006830.1 Corchorus capsularis cultivar CVL-1 contig06851, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67729
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Found at i:1685 original size:194 final size:194
Alignment explanation
Indices: 1348--1742 Score: 720
Period size: 194 Copynumber: 2.0 Consensus size: 194
1338 AGTAGATGAA
*
1348 TCAT-GAATACCTTTAGCAATTTTTCTAACTGCCATTAAGCAATCGATTTCCATAATGCAACACT
1 TCATAGAATACCTTTAGCAATTTTTCTAACTGCCATGAAGCAATCGATTTCCATAATGCAACACT
1412 GGATATTACATCTGATAGCAATTTGTAAACCAGCGTGTAAAATATCAGCAACAAAGTTGACTTGC
66 GGATATTACATCTGATAGCAATTTGTAAACCAGCGTGTAAAATATCAGCAACAAAGTTGACTTGC
*
1477 TTGAAGCTTGAAGAAATGACCTCTGCAGCAAAATTTCTAAGAACAATTCCAAGCTTTGTCGATT
131 TTGAAGCCTGAAGAAATGACCTCTGCAGCAAAATTTCTAAGAACAATTCCAAGCTTTGTCGATT
*
1541 TCATAGAATACCTTTAGCAGTTTTTCTAACTGCCATGAAGCAATCGATTTCCATAATGCAACACT
1 TCATAGAATACCTTTAGCAATTTTTCTAACTGCCATGAAGCAATCGATTTCCATAATGCAACACT
* * *
1606 GGATATTACATCTGATAGTAATTTGTAAACCAGCGTGTAAAATATCATCAACAAAGTTGATTTGC
66 GGATATTACATCTGATAGCAATTTGTAAACCAGCGTGTAAAATATCAGCAACAAAGTTGACTTGC
*
1671 TTGAAGCCTGAAGAAATGACCTCTGCAGTAAAATTTCTAAGAACAATTCCAAGCTTTGTCGATT
131 TTGAAGCCTGAAGAAATGACCTCTGCAGCAAAATTTCTAAGAACAATTCCAAGCTTTGTCGATT
1735 TCATAGAA
1 TCATAGAA
1743 GAACAGTATG
Statistics
Matches: 194, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
193 4 0.02
194 190 0.98
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (194 bp):
TCATAGAATACCTTTAGCAATTTTTCTAACTGCCATGAAGCAATCGATTTCCATAATGCAACACT
GGATATTACATCTGATAGCAATTTGTAAACCAGCGTGTAAAATATCAGCAACAAAGTTGACTTGC
TTGAAGCCTGAAGAAATGACCTCTGCAGCAAAATTTCTAAGAACAATTCCAAGCTTTGTCGATT
Found at i:7055 original size:22 final size:21
Alignment explanation
Indices: 7021--7082 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 21
7011 TAAAATTCAG
*
7021 GACAAGTTCTGCCCAGAACTTA
1 GACAACTTCTGCCCAG-ACTTA
* *
7043 GACCACTTCTGCCCAG--TTG
1 GACAACTTCTGCCCAGACTTA
7062 GACAACTTCTGCCCAGGACTT
1 GACAACTTCTGCCCA-GACTT
7083 GGCCTGTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 16 0.48
20 1 0.03
22 16 0.48
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (21 bp):
GACAACTTCTGCCCAGACTTA
Found at i:7203 original size:22 final size:22
Alignment explanation
Indices: 7166--7209 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7156 ATTGTGCAGG
*
7166 ACAACTTCGGCCCAGAACTTGT
1 ACAACTTCGGCACAGAACTTGT
* *
7188 ACAACTTCGGGACAGAAGTTGT
1 ACAACTTCGGCACAGAACTTGT
7210 TGCGGGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (22 bp):
ACAACTTCGGCACAGAACTTGT
Found at i:12574 original size:25 final size:22
Alignment explanation
Indices: 12529--12576 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 22
12519 TGGGGATTAG
12529 AAATAACTAACGAAAAACAATT
1 AAATAACTAACGAAAAACAATT
*
12551 AAATAAACTAAACTAAAGAACAATT
1 AAAT-AACT-AACGAAA-AACAATT
12576 A
1 A
12577 CTTAAAACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 4 0.18
23 4 0.18
24 6 0.27
25 8 0.36
ACGTcount: A:0.65, C:0.12, G:0.04, T:0.19
Consensus pattern (22 bp):
AAATAACTAACGAAAAACAATT
Found at i:13030 original size:15 final size:16
Alignment explanation
Indices: 13003--13032 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
12993 TGGCAAAGTG
13003 AACCCGACCCGAAAAA
1 AACCCGACCCGAAAAA
13019 AACCCG-CCCGAAAA
1 AACCCGACCCGAAAA
13033 CCCGATCCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.47, C:0.40, G:0.13, T:0.00
Consensus pattern (16 bp):
AACCCGACCCGAAAAA
Found at i:13138 original size:32 final size:32
Alignment explanation
Indices: 13102--13176 Score: 141
Period size: 32 Copynumber: 2.3 Consensus size: 32
13092 CCTGAACCTG
*
13102 AACCCGAAAAAACCCGAACCCGAAAAAGCTCA
1 AACCCGAAAAAACACGAACCCGAAAAAGCTCA
13134 AACCCGAAAAAACACGAACCCGAAAAAGCTCA
1 AACCCGAAAAAACACGAACCCGAAAAAGCTCA
13166 AACCCGAAAAA
1 AACCCGAAAAA
13177 GTTCAAACCC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.53, C:0.32, G:0.12, T:0.03
Consensus pattern (32 bp):
AACCCGAAAAAACACGAACCCGAAAAAGCTCA
Found at i:13138 original size:48 final size:48
Alignment explanation
Indices: 13101--13207 Score: 160
Period size: 48 Copynumber: 2.2 Consensus size: 48
13091 GCCTGAACCT
*
13101 GAACCCGAAAAAACCCGAACCCGAAAAAGCTCAAACCCGAAAAAACAC
1 GAACCCGAAAAAACCCAAACCCGAAAAAGCTCAAACCCGAAAAAACAC
* * * *
13149 GAACCCGAAAAAGCTCAAACCCGAAAAAGTTCAAACCCGAAAAAACCC
1 GAACCCGAAAAAACCCAAACCCGAAAAAGCTCAAACCCGAAAAAACAC
*
13197 GAATCCGAAAA
1 GAACCCGAAAA
13208 TTTATGAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.51, C:0.31, G:0.13, T:0.05
Consensus pattern (48 bp):
GAACCCGAAAAAACCCAAACCCGAAAAAGCTCAAACCCGAAAAAACAC
Found at i:13169 original size:16 final size:16
Alignment explanation
Indices: 13102--13192 Score: 119
Period size: 16 Copynumber: 5.7 Consensus size: 16
13092 CCTGAACCTG
* * *
13102 AACCCGAAAAAACCCG
1 AACCCGAAAAAGCTCA
13118 AACCCGAAAAAGCTCA
1 AACCCGAAAAAGCTCA
* * *
13134 AACCCGAAAAAACACG
1 AACCCGAAAAAGCTCA
13150 AACCCGAAAAAGCTCA
1 AACCCGAAAAAGCTCA
*
13166 AACCCGAAAAAGTTCA
1 AACCCGAAAAAGCTCA
13182 AACCCGAAAAA
1 AACCCGAAAAA
13193 ACCCGAATCC
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 65 1.00
ACGTcount: A:0.53, C:0.31, G:0.12, T:0.04
Consensus pattern (16 bp):
AACCCGAAAAAGCTCA
Found at i:13397 original size:31 final size:31
Alignment explanation
Indices: 13355--13425 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
13345 ACCCAAACAG
13355 AACCCGAACCCGAATTAACCTGACCCAAATT
1 AACCCGAACCCGAATTAACCTGACCCAAATT
* *
13386 AACCTGAACCCGAATTAACCTGACCCAAATCC
1 AACCCGAACCCGAATTAACCTGACCCAAAT-T
13418 AACCCGAA
1 AACCCGAA
13426 TCGGACTCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
31 29 0.81
32 7 0.19
ACGTcount: A:0.39, C:0.37, G:0.10, T:0.14
Consensus pattern (31 bp):
AACCCGAACCCGAATTAACCTGACCCAAATT
Found at i:13401 original size:16 final size:16
Alignment explanation
Indices: 13355--13408 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
13345 ACCCAAACAG
*
13355 AACCCGAACCCGAATT
1 AACCTGAACCCGAATT
*
13371 AACCTG-ACCCAAATT
1 AACCTGAACCCGAATT
13386 AACCTGAACCCGAATT
1 AACCTGAACCCGAATT
13402 AACCTGA
1 AACCTGA
13409 CCCAAATCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
15 14 0.41
16 20 0.59
ACGTcount: A:0.39, C:0.33, G:0.11, T:0.17
Consensus pattern (16 bp):
AACCTGAACCCGAATT
Found at i:13421 original size:16 final size:15
Alignment explanation
Indices: 13362--13415 Score: 81
Period size: 15 Copynumber: 3.5 Consensus size: 15
13352 CAGAACCCGA
*
13362 ACCCGAATTAACCTG
1 ACCCAAATTAACCTG
13377 ACCCAAATTAACCTG
1 ACCCAAATTAACCTG
*
13392 AACCCGAATTAACCTG
1 -ACCCAAATTAACCTG
13408 ACCCAAAT
1 ACCCAAAT
13416 CCAACCCGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
15 21 0.60
16 14 0.40
ACGTcount: A:0.39, C:0.33, G:0.09, T:0.19
Consensus pattern (15 bp):
ACCCAAATTAACCTG
Found at i:15403 original size:27 final size:26
Alignment explanation
Indices: 15360--15410 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
15350 ATGATTTAGG
*
15360 GGTTACTAACTCCCTTTTTTCTTTTGA
1 GGTTACTAACACCCTTTTTT-TTTTGA
*
15387 GGTTACTAACACTCTTTTTTTTTT
1 GGTTACTAACACCCTTTTTTTTTT
15411 CAGAGGGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.16, C:0.20, G:0.10, T:0.55
Consensus pattern (26 bp):
GGTTACTAACACCCTTTTTTTTTTGA
Found at i:18181 original size:50 final size:50
Alignment explanation
Indices: 18099--18530 Score: 649
Period size: 50 Copynumber: 8.7 Consensus size: 50
18089 AAGAACTAAC
*
18099 ACCTTCCGACCAGGAA-GGGCATTCTGGGAAACAAATAAAGAAAACTGGG
1 ACCTTCCGACCAGGAAGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
* * *
18148 ATCTTCCAACCAGGAAGGGGCATTTTGGGAAACAAATAAAGAAAGCTGGG
1 ACCTTCCGACCAGGAAGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
*
18198 ACCTTCCGACCAGG-ATGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
1 ACCTTCCGACCAGGAAGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
*
18247 ACCTTCCGACTAGGAAGGGGCATTTTGGGAAACAAATAAAGAAAACT-GG
1 ACCTTCCGACCAGGAAGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
** * * *
18296 ACCTTTTGACCAGGAAGGGGCAATTCGGGAAACAAATAAAGAAAGCTGGG
1 ACCTTCCGACCAGGAAGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
* *
18346 ACCTTCCGACCAGGAAGGGGCATGTTGGG-AACAAATAAAGAAAACTAGG
1 ACCTTCCGACCAGGAAGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
* * *
18395 ACCTTCCGACTAGGAAAGGGCATTTCGGGAAACAAATAAAGAAAACTGGG
1 ACCTTCCGACCAGGAAGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
* * **
18445 ACCTTCCGATCAGGAAGGGGCATTTTGGGAGACAAATAAAGAATGCTGGG
1 ACCTTCCGACCAGGAAGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
18495 ACCTTCCGACCAGGAAGGGGCATTTTGGG-AACAAAT
1 ACCTTCCGACCAGGAAGGGGCATTTTGGGAAACAAAT
18531 GAGAAGAATT
Statistics
Matches: 342, Mismatches: 37, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
49 152 0.44
50 190 0.56
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.17
Consensus pattern (50 bp):
ACCTTCCGACCAGGAAGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
Found at i:18270 original size:99 final size:100
Alignment explanation
Indices: 18099--18575 Score: 628
Period size: 99 Copynumber: 4.8 Consensus size: 100
18089 AAGAACTAAC
* * * *
18099 ACCTTCCGACCAGG-AAGGGCATTCTGGGAAACAAATAAAGAAAACTGGGATCTTCCAACCAGGA
1 ACCTTCCGACCAGGAAAGGGCATTTTGGGAAACAAATAAAGAAAACTGGGACCTTCCGACTAGGA
*
18163 AGGGGCATTTTGGGAAACAAATAAAGAAAGCTGGG
66 AGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
*
18198 ACCTTCCGACCAGG-ATGGGCATTTTGGGAAACAAATAAAGAAAACTGGGACCTTCCGACTAGGA
1 ACCTTCCGACCAGGAAAGGGCATTTTGGGAAACAAATAAAGAAAACTGGGACCTTCCGACTAGGA
18262 AGGGGCATTTTGGGAAACAAATAAAGAAAACT-GG
66 AGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
** * * * * *
18296 ACCTTTTGACCAGGAAGGGGCAATTCGGGAAACAAATAAAGAAAGCTGGGACCTTCCGACCAGGA
1 ACCTTCCGACCAGGAAAGGGCATTTTGGGAAACAAATAAAGAAAACTGGGACCTTCCGACTAGGA
* *
18361 AGGGGCATGTTGGG-AACAAATAAAGAAAACTAGG
66 AGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
* *
18395 ACCTTCCGACTAGGAAAGGGCATTTCGGGAAACAAATAAAGAAAACTGGGACCTTCCGA-TCAGG
1 ACCTTCCGACCAGGAAAGGGCATTTTGGGAAACAAATAAAGAAAACTGGGACCTTCCGACT-AGG
* **
18459 AAGGGGCATTTTGGGAGACAAATAAAGAATGCTGGG
65 AAGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
* * * * * * *
18495 ACCTTCCGACCAGGAAGGGGCATTTTGGG-AACAAAT-GAGAAGAATTTGTACCTTCCGATTGGG
1 ACCTTCCGACCAGGAAAGGGCATTTTGGGAAACAAATAAAGAA-AACTGGGACCTTCCGACTAGG
18558 AA-GGGCAGTTTTGGGAAA
65 AAGGGGCA-TTTTGGGAAA
18576 AGCAAGTAAA
Statistics
Matches: 336, Mismatches: 35, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
98 40 0.12
99 253 0.75
100 43 0.13
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (100 bp):
ACCTTCCGACCAGGAAAGGGCATTTTGGGAAACAAATAAAGAAAACTGGGACCTTCCGACTAGGA
AGGGGCATTTTGGGAAACAAATAAAGAAAACTGGG
Found at i:27680 original size:21 final size:21
Alignment explanation
Indices: 27656--27722 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
27646 ATGTTTTGAG
27656 CAAGAATATTCCAATCGATTC
1 CAAGAATATTCCAATCGATTC
*
27677 CAAG-CT-TCTCACAATCGATTC
1 CAAGAATAT-TC-CAATCGATTC
* *
27698 TAGGAATATTCCAATCGATTC
1 CAAGAATATTCCAATCGATTC
27719 CAAG
1 CAAG
27723 TTATGCACTT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
19 1 0.03
20 3 0.08
21 28 0.78
22 3 0.08
23 1 0.03
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.28
Consensus pattern (21 bp):
CAAGAATATTCCAATCGATTC
Found at i:28566 original size:7 final size:8
Alignment explanation
Indices: 28547--28578 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
28537 AGTTATATCG
*
28547 AAAAATAT
1 AAAAAAAT
28555 AAAAAAAT
1 AAAAAAAT
28563 AAAAAAAT
1 AAAAAAAT
28571 AAAAAAAT
1 AAAAAAAT
28579 TCGACCAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
AAAAAAAT
Found at i:29381 original size:21 final size:20
Alignment explanation
Indices: 29342--29386 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
29332 AATTATCAAT
* *
29342 TAAAAAGAAAGCAATTAAAC
1 TAAAAACAAAGCAAGTAAAC
*
29362 TAAAAACAAAGCAAAGTAAAT
1 TAAAAACAAAGC-AAGTAAAC
29383 TAAA
1 TAAA
29387 TATAAATCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.67, C:0.09, G:0.09, T:0.16
Consensus pattern (20 bp):
TAAAAACAAAGCAAGTAAAC
Found at i:30755 original size:22 final size:21
Alignment explanation
Indices: 30725--30783 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 21
30715 AATTCTTGCT
*
30725 TCTTGAAATAATTCTTCAATGA
1 TCTTCAAATAATTCTTCAAT-A
* **
30747 TCTTCAAAT-CTTC-AAAATA
1 TCTTCAAATAATTCTTCAATA
30766 TCTTCAAATAA-TCTTCAA
1 TCTTCAAATAATTCTTCAA
30784 ACACGAACTT
Statistics
Matches: 28, Mismatches: 7, Indels: 6
0.68 0.17 0.15
Matches are distributed among these distances:
19 12 0.43
20 5 0.18
21 3 0.11
22 8 0.29
ACGTcount: A:0.39, C:0.19, G:0.03, T:0.39
Consensus pattern (21 bp):
TCTTCAAATAATTCTTCAATA
Found at i:30770 original size:11 final size:12
Alignment explanation
Indices: 30753--30784 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
30743 ATGATCTTCA
30753 AATCTTCAAAAT
1 AATCTTCAAAAT
30765 -ATCTTC-AAAT
1 AATCTTCAAAAT
30775 AATCTTCAAA
1 AATCTTCAAA
30785 CACGAACTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
10 4 0.22
11 12 0.67
12 2 0.11
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (12 bp):
AATCTTCAAAAT
Found at i:32908 original size:32 final size:34
Alignment explanation
Indices: 32871--32944 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 34
32861 ACGGGTTGGG
32871 CGTGGCCGGGCATGCG-GCAC-GGATGGCGCGGCA
1 CGTGGCCGGGC-TGCGTGCACGGGATGGCGCGGCA
* * *
32904 -GTGGCCTGGCTGGGTGCACGGGCTGGCGCGGCA
1 CGTGGCCGGGCTGCGTGCACGGGATGGCGCGGCA
32937 CG-GGCCGG
1 CGTGGCCGG
32945 TATCGTCGCA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
31 3 0.09
32 13 0.38
33 17 0.50
34 1 0.03
ACGTcount: A:0.08, C:0.30, G:0.51, T:0.11
Consensus pattern (34 bp):
CGTGGCCGGGCTGCGTGCACGGGATGGCGCGGCA
Found at i:36459 original size:21 final size:20
Alignment explanation
Indices: 36420--36464 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
36410 AATTATCAAT
* *
36420 TAAAAAGAAAGCAATTAAAC
1 TAAAAACAAAGCAAGTAAAC
*
36440 TAAAAACAAAGCAAAGTAAAT
1 TAAAAACAAAGC-AAGTAAAC
36461 TAAA
1 TAAA
36465 TATAAATCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.67, C:0.09, G:0.09, T:0.16
Consensus pattern (20 bp):
TAAAAACAAAGCAAGTAAAC
Found at i:38399 original size:30 final size:30
Alignment explanation
Indices: 38363--38425 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
38353 TGTCTTCAAG
38363 TCCATGATAAGTCCTT-GGCGCATCATTCCC
1 TCCATGATAAG-CCTTGGGCGCATCATTCCC
38393 TCCATGATAAGCCTTGGGCGCATCATTCCC
1 TCCATGATAAGCCTTGGGCGCATCATTCCC
38423 TCC
1 TCC
38426 CCCTTGAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 4 0.12
30 28 0.88
ACGTcount: A:0.19, C:0.35, G:0.17, T:0.29
Consensus pattern (30 bp):
TCCATGATAAGCCTTGGGCGCATCATTCCC
Found at i:59155 original size:33 final size:32
Alignment explanation
Indices: 59118--59224 Score: 126
Period size: 33 Copynumber: 3.2 Consensus size: 32
59108 CGTCAAGCGA
* *
59118 TGGCCGGTTG-TGGCCGGACATGTCCATGTCGCG
1 TGGCCGG-TGATGGCCGGGCATCTCCA-GTCGCG
59151 TGGCCGGTGATGGCCGGGCATCTCCGAGTCGCG
1 TGGCCGGTGATGGCCGGGCATCTCC-AGTCGCG
* * *
59184 TGGCCGGTGTTGGCCGGGCTTCTCCAAGTCGCA
1 TGGCCGGTGATGGCCGGGCATCTCC-AGTCGCG
59217 TGGCCGGT
1 TGGCCGGT
59225 CACTCGCGTC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
32 2 0.03
33 63 0.95
34 1 0.02
ACGTcount: A:0.08, C:0.29, G:0.40, T:0.22
Consensus pattern (32 bp):
TGGCCGGTGATGGCCGGGCATCTCCAGTCGCG
Found at i:64562 original size:18 final size:18
Alignment explanation
Indices: 64528--64561 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64518 TGGTCGAAAT
*
64528 TTTTTTTATTTTATTTTA
1 TTTTTTTATTATATTTTA
64546 TTTTTTTA-TATATTTT
1 TTTTTTTATTATATTTT
64562 TCGATATAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTTATTATATTTTA
Found at i:64669 original size:9 final size:8
Alignment explanation
Indices: 64635--64668 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
64625 GAATCGGCTA
64635 TGAATTTT
1 TGAATTTT
*
64643 TGAAGTTTC
1 TGAA-TTTT
64652 TGAATTTT
1 TGAATTTT
64660 TGAATTTT
1 TGAATTTT
64668 T
1 T
64669 TCAAGAAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.59
Consensus pattern (8 bp):
TGAATTTT
Found at i:65623 original size:33 final size:34
Alignment explanation
Indices: 65586--65659 Score: 98
Period size: 33 Copynumber: 2.2 Consensus size: 34
65576 CCGAGTCGTT
* *
65586 TGGCCGGTTG-TAGCCGGATATGTCCATGTCGCG
1 TGGCCGGTTGATAGCCGGACAAGTCCATGTCGCG
* *
65619 TGGCC-GATGATGGCCGGACAAGTCCATGTCGCG
1 TGGCCGGTTGATAGCCGGACAAGTCCATGTCGCG
65652 TGGCCGGT
1 TGGCCGGT
65660 CTTGTGGCTG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
32 3 0.09
33 30 0.88
34 1 0.03
ACGTcount: A:0.14, C:0.26, G:0.38, T:0.23
Consensus pattern (34 bp):
TGGCCGGTTGATAGCCGGACAAGTCCATGTCGCG
Found at i:66234 original size:158 final size:157
Alignment explanation
Indices: 65835--67026 Score: 1499
Period size: 158 Copynumber: 7.5 Consensus size: 157
65825 GGAGAGCTTT
* * * *
65835 AGGGCTATGAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAACCG
1 AGGGCTGTCAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTCGTTGCGCAAAAATCG
* * * * *
65900 CTTCTGGAATGAGCCTTTTGCTAAGAAAGATGTTTTGCACTCAAACGCTCAATGTTGAGGCGTTG
66 CTTCTGGAATGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGC-CAATGTTGAGGCTTTG
*
65965 GGCTTCAAGGAGAGCTTTATTTTTGCAC
130 GGCTTCAAGGAGAGCTTTGTTTTTGCAC
* * * *
65993 AGGGGTGTCCAACAAGCTCATCTCACTCCGACAAAAGGCTTTTGAGTACTCGTTGCGCAAAAATC
1 AGGGCTGT-CAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTCGTTGCGCAAAAATC
** * *
66058 GCTTAGGGAATGAGGCTTTCGGTAAGAACGATGTTTTGCACACATTGACG-CAATGTTGAGGCTT
65 GCTTCTGGAATGAGCCTTTCGGTAAGAACGATGTTTTGCACACA--AACGCCAATGTTGAGGCTT
* *
66122 TGGGCTTCAAGGAGAGCTTTGTTTCTGCAT
128 TGGGCTTCAAGGAGAGCTTTGTTTTTGCAC
* * * * *
66152 AGGGCTGTCAATAAGCTCATCTCACTCCAACACAAGGCCTTTGAGCACTTGTTGCACAAAAACCG
1 AGGGCTGTCAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTCGTTGCGCAAAAATCG
* *
66217 CTTCTGGAATGAAG-CTTTTGTTAAGAACGATGTTTTGCACACAAACGCTCAATGTTGAGGCTTT
66 CTTCTGGAATG-AGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGC-CAATGTTGAGGCTTT
* * * **
66281 GGGGTTCGAGCAGAGCTAGGTTTTTGCAC
129 GGGCTTCAAGGAGAGCTTTGTTTTTGCAC
* * * *
66310 AAGGCTGTCAAAGAAGCTCAACTCACTCCAACACAAGGCTTTTGAGCACTCGTTGCGCAAAAATT
1 AGGGCTGTC-AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTCGTTGCGCAAAAATC
* * * * * * *
66375 TCCTCTGGAATGAGTCTTTTGCTAACAACGATGTTTTGCACACAAACGCACAAAGTTGAGGCTTT
65 GCTTCTGGAATGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGC-CAATGTTGAGGCTTT
* * *
66440 GGGGTTCGAGGAGAGCTATGTTTTTGCAC
129 GGGCTTCAAGGAGAGCTTTGTTTTTGCAC
* * * * *
66469 AGGGCTGTCAAATAAGCTTATCTCACTCTAACGCAAGGCCTTTGAGCACTCGTTGCGCAAAAATC
1 AGGGCTGTC-AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTCGTTGCGCAAAAATC
* * * *
66534 GCTTCTGGAATGAGCCCTTCGGTAAGAACGATGATTAGCACACAAACGTGCAATGTTGAGGCTTT
65 GCTTCTGGAATGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACG-CCAATGTTGAGGCTTT
* * * * *
66599 GGGTTTTAAGGAGAGTTTTGTTTCTGCAT
129 GGGCTTCAAGGAGAGCTTTGTTTTTGCAC
* * *
66628 AGGGCTGTCAATAAGCTCATCTCACTCCAATACAAGGCTTTTAAGCACTCGTTGCGCAAAAATCG
1 AGGGCTGTCAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTCGTTGCGCAAAAATCG
* *
66693 CTTCTTGAATGAGCCTTTCGGTAAGAACGATGTTTTGCACTCAAACGCTCAATGTTGAGGCTTTG
66 CTTCTGGAATGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGC-CAATGTTGAGGCTTTG
** *
66758 GGCTTCAACTAGAGCTTTATTTTTGCAC
130 GGCTTCAAGGAGAGCTTTGTTTTTGCAC
* * *
66786 AGGGGTGTCTAACAAGCTTATCTCACTCC-ACAAAAGGCTTTTGAGCACTCGTTGCGCAAAAATC
1 AGGGCTGTC-AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTCGTTGCGCAAAAATC
* * *
66850 GCTTATGGAATGAGCCTTTCGGTAAGAACGAAGTTTTGCACACAAACACGCAATGTTGAGGCTTT
65 GCTTCTGGAATGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGC-CAATGTTGAGGCTTT
* * * *
66915 GGGCTTCAAGGAAAACTTTCTTTCTGCAC
129 GGGCTTCAAGGAGAGCTTTGTTTTTGCAC
* * *
66944 AGGGCTGTCAACAAGCTCATCTCACTCCAACACAAGGCTCTTGAGCACTTGTTGCGCAAAAACCG
1 AGGGCTGTCAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTCGTTGCGCAAAAATCG
* *
67009 CTTCTTGAATGAACCTTT
66 CTTCTGGAATGAGCCTTT
67027 TGTTACGCTC
Statistics
Matches: 892, Mismatches: 130, Indels: 24
0.85 0.12 0.02
Matches are distributed among these distances:
156 3 0.00
157 18 0.02
158 443 0.50
159 425 0.48
161 3 0.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (157 bp):
AGGGCTGTCAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTCGTTGCGCAAAAATCG
CTTCTGGAATGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGCCAATGTTGAGGCTTTGG
GCTTCAAGGAGAGCTTTGTTTTTGCAC
Found at i:66409 original size:317 final size:314
Alignment explanation
Indices: 65844--67729 Score: 2102
Period size: 317 Copynumber: 6.0 Consensus size: 314
65834 TAGGGCTATG
*
65844 AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAACCGCTTCTGGAA
1 AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAATCGCTTCTGGAA
* * * * *
65909 TGAGCCTTTTGCTAAGAAAGATGTTTTGCACTCAAACGCTCAATGTTGAGGCGTTGGGCTTCAAG
66 TGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGCTCAATGTTGAGGCTTTGGGCTTCAAG
* * * * *
65974 GAGAGCTTTATTTTTGCACAGGGGTGTCCAACAAGCTCATCTCACTCCGACAAAAGGCTTTTGAG
131 GAGAGCTTTGTTTCTGCACAGGGCTGT-CAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAG
* *** * *
66039 TACTCGTTGCGCAAAAATCGCTTAGGGAATGAGGCTTTCGGTAAGAACGATGTTTTGCACACATT
195 CACTCGTTGCGCAAAAATCGCTTCTAGAATGAGCCTTTCGCTAAGAACGATGTTTTGCACACA--
* *
66104 GACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTCTGCATAGGGCTGTC-
258 G-CGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTTTGCACAGGGCTGTCA
* * * *
66161 AATAAGCTCATCTCACTCCAACACAAGGCCTTTGAGCACTTGTTGCACAAAAACCGCTTCTGGAA
1 AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAATCGCTTCTGGAA
* * * *
66226 TGAAG-CTTTTGTTAAGAACGATGTTTTGCACACAAACGCTCAATGTTGAGGCTTTGGGGTTCGA
66 TG-AGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGCTCAATGTTGAGGCTTTGGGCTTCAA
* ** * * * *
66290 GCAGAGCTAGGTTTTTGCACAAGGCTGTCAAAGAAGCTCAACTCACTCCAACACAAGGCTTTTGA
130 GGAGAGCTTTGTTTCTGCACAGGGCTGTC-AACAAGCTCATCTCACTCCAACACAAGGCTTTTGA
** * * * * *
66355 GCACTCGTTGCGCAAAAATTTCCTCTGGAATGAGTCTTTTGCTAACAACGATGTTTTGCACACAA
194 GCACTCGTTGCGCAAAAATCGCTTCTAGAATGAGCCTTTCGCTAAGAACGATGTTTTGCACAC--
* * * * *
66420 ACGCACAAAGTTGAGGCTTTGGGGTTCGAGGAGAGCTATGTTTTTGCACAGGGCTGTCA
257 A-GCGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTTTGCACAGGGCTGTCA
* * * * * *
66479 AATAAGCTTATCTCACTCTAACGCAAGGCCTTTGAGCACTCGTTGCGCAAAAATCGCTTCTGGAA
1 AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAATCGCTTCTGGAA
* * * * *
66544 TGAGCCCTTCGGTAAGAACGATGATTAGCACACAAACG-TGCAATGTTGAGGCTTTGGGTTTTAA
66 TGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGCT-CAATGTTGAGGCTTTGGGCTTCAA
* * * * *
66608 GGAGAGTTTTGTTTCTGCATAGGGCTGTCAATAAGCTCATCTCACTCCAATACAAGGCTTTTAAG
130 GGAGAGCTTTGTTTCTGCACAGGGCTGTCAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAG
* * *
66673 CACTCGTTGCGCAAAAATCGCTTCTTGAATGAGCCTTTCGGTAAGAACGATGTTTTGCACTCAAA
195 CACTCGTTGCGCAAAAATCGCTTCTAGAATGAGCCTTTCGCTAAGAACGATGTTTTGCA--CACA
* ** * * *
66738 CGCTCAATGTTGAGGCTTTGGGCTTCAACTAGAGCTTTATTTTTGCACAGGGGTGTCT
258 -GCGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTTTGCACAGGGCTGTCA
* * * *
66796 AACAAGCTTATCTCACTCC-ACAAAAGGCTTTTGAGCACTCGTTGCGCAAAAATCGCTTATGGAA
1 AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAATCGCTTCTGGAA
* * *
66860 TGAGCCTTTCGGTAAGAACGAAGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAG
66 TGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGCTCAATGTTGAGGCTTTGGGCTTCAAG
* * * *
66925 GAAAACTTTCTTTCTGCACAGGGCTGTCAACAAGCTCATCTCACTCCAACACAAGGCTCTTGAGC
131 GAGAGCTTTGTTTCTGCACAGGGCTGTCAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGC
* * * * *
66990 ACTTGTTGCGCAAAAACCGCTTCTTGAATGAACC-TT---T--------TG--TT----AC-GCT
196 ACTCGTTGCGCAAAAATCGCTTCTAGAATGAGCCTTTCGCTAAGAACGATGTTTTGCACACAGCG
* * * *
67036 CAATGTTGAGGCTTTGGG-TTTAGAGGAGAG-TTAGGTTTTTGCAGATGGCTGTCA
261 CAATGTTGAGGCTTTGGGCTTCA-AGGAGAGCTT-TGTTTTTGCACAGGGCTGTCA
* * * *
67090 AAGAAGCTCAACTCACTCCAACACAAGGCTTTTGGGCACTTGTTGCGCAAAAATCGCTTTTGGAA
1 AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAATCGCTTCTGGAA
* * * * * * * * *
67155 TGAGTCTTTTGCTAAG-AGGATGTTTCGCACACAAACGCACAAAGTTGAGGCTTTGGGGTTCGAG
66 TGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGCTCAATGTTGAGGCTTTGGGCTTCAAG
** * * * * * * *
67219 GAGAGCTAGGTTTTTGCACAGGGCTGTCAAATAAGCTTATTTCACTCTAACGCAAGGCCTTTGAG
131 GAGAGCTTTGTTTCTGCACAGGGCTGTC-AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAG
* * * * *
67284 CACTCGTTGCGTAAAAACCGCTTCTAGAATGAGCCTTTCGATAAGAACGATGTTTTGCATAGAAA
195 CACTCGTTGCGCAAAAATCGCTTCTAGAATGAGCCTTTCGCTAAGAACGATGTTTTGC--ACACA
* * *
67349 CGCGCAATGTTGAGGCTTTGGGCTTCAAGGTGAGATTTGTTTTTGCACAGGGCTGTCC
258 -GCGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTTTGCACAGGGCTGTCA
* * *
67407 AACAAGCTCATCTCACTCCGACAAAAGGCTTTTGAGCA-TTCATTGCGCAAAAATCGCTTCT-GA
1 AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTT-GTTGCGCAAAAATCGCTTCTGGA
* * *
67470 ATGAGCCTTTCGGTAAGAAAGATGTTTTGCACACAAACACACAATGTTGAGG-TTTGGGCTTCAA
65 ATGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGCTCAATGTTGAGGCTTTGGGCTTCAA
* * * *
67534 GGAGAGCTTTGTTTCTGCATAGGGCTGTCACCAAGCTGATCTCACTCCGACACAAGGCTTTTGAG
130 GGAGAGCTTTGTTTCTGCACAGGGCTGTCAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAG
* * * * * *
67599 CACTTGTTGTGTAAAAACCGCTTCTAGAATGAACCTTTTGCTAAGAACGATGTTTTGCACACAAA
195 CACTCGTTGCGCAAAAATCGCTTCTAGAATGAGCCTTTCGCTAAGAACGATGTTTTGCACAC--A
* * *
67664 CGCGCAATGTTGAGACTTTGGGCTTCAAAGAGAGCTTTGTTTTTGCACAGGGCTGTCC
258 -GCGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTTTGCACAGGGCTGTCA
67722 AACAAGCT
1 AACAAGCT
Statistics
Matches: 1328, Mismatches: 199, Indels: 86
0.82 0.12 0.05
Matches are distributed among these distances:
293 5 0.00
294 119 0.09
295 114 0.09
296 3 0.00
299 1 0.00
302 2 0.00
304 2 0.00
307 2 0.00
309 2 0.00
312 1 0.00
313 2 0.00
315 147 0.11
316 238 0.18
317 547 0.41
318 140 0.11
319 3 0.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (314 bp):
AACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAATCGCTTCTGGAA
TGAGCCTTTCGGTAAGAACGATGTTTTGCACACAAACGCTCAATGTTGAGGCTTTGGGCTTCAAG
GAGAGCTTTGTTTCTGCACAGGGCTGTCAACAAGCTCATCTCACTCCAACACAAGGCTTTTGAGC
ACTCGTTGCGCAAAAATCGCTTCTAGAATGAGCCTTTCGCTAAGAACGATGTTTTGCACACAGCG
CAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTTTGCACAGGGCTGTCA
Found at i:67264 original size:158 final size:159
Alignment explanation
Indices: 67031--67729 Score: 827
Period size: 158 Copynumber: 4.4 Consensus size: 159
67021 ACCTTTTGTT
* * * * * *
67031 ACGCTCAATGTTGAGGCTTTGGG-TTTAGAGGAGAG-TTAGGTTTTTGCAGATGGCTGTCAAAGA
1 ACGCACAATGTTGAGGCTTTGGGCTTCA-AGGAGAGCTT-TGTTTTTGCACAGGGCTGTCAAACA
* * * * *
67094 AGCTCAACTCACTCCAACACAAGGCTTTTGGGCACTTGTTGCGCAAAAATCGCTTTTGGAATGAG
64 AGCTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAACCGCTTCTAGAATGAG
* * * *
67159 TCTTTTGCTAAG-AGGATGTTTCGCACACAA
129 CCTTTCGCTAAGAACGATGTTTTGCACACAA
* * * ** *
67189 ACGCACAAAGTTGAGGCTTTGGGGTTCGAGGAGAGCTAGGTTTTTGCACAGGGCTGTCAAATAAG
1 ACGCACAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTTTGCACAGGGCTGTCAAACAAG
* * * * * * *
67254 CTTATTTCACTCTAACGCAAGGCCTTTGAGCACTCGTTGCGTAAAAACCGCTTCTAGAATGAGCC
66 CTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAACCGCTTCTAGAATGAGCC
* * *
67319 TTTCGATAAGAACGATGTTTTGCATAGAA
131 TTTCGCTAAGAACGATGTTTTGCACACAA
* * * *
67348 ACGCGCAATGTTGAGGCTTTGGGCTTCAAGGTGAGATTTGTTTTTGCACAGGGCTGTCCAACAAG
1 ACGCACAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTTTGCACAGGGCTGTCAAACAAG
* * * *
67413 CTCATCTCACTCCGACAAAAGGCTTTTGAGCA-TTCATTGCGCAAAAATCGCTTCT-GAATGAGC
66 CTCATCTCACTCCAACACAAGGCTTTTGAGCACTT-GTTGCGCAAAAACCGCTTCTAGAATGAGC
* *
67476 CTTTCGGTAAGAAAGATGTTTTGCACACAA
130 CTTTCGCTAAGAACGATGTTTTGCACACAA
* * * *
67506 ACACACAATGTTGAGG-TTTGGGCTTCAAGGAGAGCTTTGTTTCTGCATAGGGCTGTC-ACCAAG
1 ACGCACAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTTTGCACAGGGCTGTCAAACAAG
* * * * *
67569 CTGATCTCACTCCGACACAAGGCTTTTGAGCACTTGTTGTGTAAAAACCGCTTCTAGAATGAACC
66 CTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAACCGCTTCTAGAATGAGCC
*
67634 TTTTGCTAAGAACGATGTTTTGCACACAA
131 TTTCGCTAAGAACGATGTTTTGCACACAA
* * * *
67663 ACGCGCAATGTTGAGACTTTGGGCTTCAAAGAGAGCTTTGTTTTTGCACAGGGCTGTCCAACAAG
1 ACGCACAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTTTGCACAGGGCTGTCAAACAAG
67728 CT
66 CT
Statistics
Matches: 457, Mismatches: 76, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
156 51 0.11
157 86 0.19
158 199 0.44
159 121 0.26
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (159 bp):
ACGCACAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTTTTTGCACAGGGCTGTCAAACAAG
CTCATCTCACTCCAACACAAGGCTTTTGAGCACTTGTTGCGCAAAAACCGCTTCTAGAATGAGCC
TTTCGCTAAGAACGATGTTTTGCACACAA
Done.