genome.fa.s6831.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006831.1 Corchorus capsularis cultivar CVL-1 contig06852, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12007

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34--73	20	2.0	21	85	5	55	42	0	12	45	1.42
172--215	2	23.0	2	90	9	74	47	0	0	52	1.00
4676--4750	36	2.1	36	87	7	109	53	2	24	20	1.58
4715--4943	22	10.8	21	72	16	154	52	4	21	21	1.65
4711--4943	44	5.4	43	73	15	198	52	4	21	21	1.65
4837--5232	14	27.9	14	64	21	58	56	4	21	17	1.58
4914--5081	14	12.3	14	68	18	95	53	5	23	17	1.64
4953--5046	40	2.3	40	94	5	163	53	6	21	19	1.67
5036--5458	7	62.0	7	63	18	76	56	3	23	16	1.57
5036--5072	12	2.8	13	92	8	58	54	0	27	18	1.44
5059--5136	36	2.2	36	86	4	106	60	3	19	16	1.51
5059--5150	35	2.7	35	83	8	118	59	3	20	16	1.50
5047--5227	82	2.2	83	98	1	355	58	3	21	16	1.52
5125--5167	19	2.3	19	87	0	59	55	4	23	16	1.59
5141--5219	37	2.2	36	84	6	99	60	3	18	16	1.50
4904--5408	265	1.9	259	89	6	789	55	4	22	17	1.59
5308--5365	19	3.0	19	74	2	53	55	3	24	17	1.57
5099--5382	46	6.1	48	72	18	201	56	4	22	16	1.59
5358--5402	20	2.2	20	84	0	54	60	2	24	13	1.45
5356--5473	27	4.5	26	71	10	89	57	1	25	15	1.47
5326--5444	35	3.6	33	82	10	129	57	2	25	15	1.51
5302--5516	111	1.9	110	88	2	324	54	2	27	15	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5435--5547	34	3.2	34	81	8	138	53	3	27	15	1.59
5435--5562	34	3.6	34	74	13	118	53	3	25	17	1.61
5586--5652	21	3.1	21	72	10	64	50	7	16	25	1.71
6540--6594	26	2.1	26	86	0	74	36	7	23	32	1.82
6769--6864	51	1.9	50	86	2	138	37	27	10	25	1.88
8576--8738	72	2.2	73	82	8	190	56	12	17	13	1.67
9579--9633	26	2.1	26	86	0	74	36	7	23	32	1.82
9808--9903	51	1.9	50	86	2	138	38	26	9	26	1.86
10499--10566	36	1.9	35	81	3	82	57	1	0	41	1.08
10521--10571	15	3.5	15	76	12	52	50	1	0	47	1.12
11048--11174	64	2.0	64	88	0	191	29	16	16	37	1.91
11861--11886	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!