Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006832.1 Corchorus capsularis cultivar CVL-1 contig06853, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15531

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
152--191
19
2.1
19
85
0
53
40
5
0
55
1.22
265--353
38
2.4
37
84
3
115
14
19
11
55
1.69
1252--1313
11
5.3
11
75
11
52
51
1
1
45
1.20
1251--1323
37
2.0
37
97
2
139
49
2
2
45
1.31
1389--1425
19
1.9
19
89
10
58
29
5
0
64
1.15
1591--1717
22
5.7
23
74
12
97
36
10
15
37
1.82
1592--1717
44
2.9
44
85
4
148
36
10
15
37
1.82
1623--1763
44
3.2
44
83
3
149
39
12
14
34
1.83
1911--2412
22
23.0
22
68
15
161
38
10
15
35
1.82
2121--2224
23
4.6
23
83
3
113
37
9
13
39
1.77
2099--2224
45
2.8
45
83
5
148
38
9
13
38
1.77
2385--2434
23
2.2
22
82
10
57
52
4
14
30
1.59
3027--3066
13
3.1
13
85
0
53
45
15
15
25
1.84
3440--3637
41
4.8
41
79
5
222
34
17
14
33
1.90
8207--8246
13
3.1
13
85
0
53
45
15
15
25
1.84
12068--12262
97
2.0
97
100
0
390
37
11
21
29
1.88
12854--12902
6
7.8
6
86
8
71
34
12
2
51
1.51
12854--12909
12
4.4
13
80
14
64
35
10
1
51
1.47
12854--12902
20
2.6
18
90
6
71
34
12
2
51
1.51
15236--15273
19
1.9
19
89
5
58
28
13
7
50
1.69

Tables:   1

The End!