Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006834.1 Corchorus capsularis cultivar CVL-1 contig06855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31098

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1234--1345
50
2.2
51
93
4
201
35
8
43
12
1.72
6541--6617
29
2.7
29
95
0
136
15
15
28
40
1.88
6720--6794
32
2.3
32
84
11
91
28
5
16
50
1.66
9045--9236
50
3.8
50
79
4
199
41
4
15
38
1.67
9045--9236
101
1.9
101
86
5
273
41
4
15
38
1.67
9923--10049
55
2.3
55
88
0
182
49
7
18
24
1.72
10037--10375
72
4.8
70
74
11
280
48
7
18
25
1.74
10049--10581
142
3.7
140
87
4
529
48
6
19
26
1.72
10121--10375
70
3.6
70
78
8
309
47
6
19
26
1.73
10187--10305
39
3.2
40
71
19
119
48
5
20
25
1.71
10357--10552
32
5.7
31
71
22
124
47
5
21
26
1.71
10328--10581
72
3.5
73
92
1
404
48
5
20
26
1.70
10501--10568
32
2.1
31
89
8
100
50
5
19
25
1.70
10849--10921
26
2.7
27
79
10
87
53
2
20
23
1.58
19713--19743
11
2.8
11
100
0
62
48
25
16
9
1.76
26697--26732
18
2.1
17
94
5
63
11
16
8
63
1.49
27529--27564
18
2.1
17
94
5
63
11
16
8
63
1.49
26500--28168
832
2.0
832
99
0
3329
28
16
18
36
1.93

Tables:   1

The End!