Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006836.1 Corchorus capsularis cultivar CVL-1 contig06857, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38691

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6817--6855
20
2.0
19
85
5
51
53
10
5
30
1.56
7058--7100
21
2.0
21
82
8
52
30
23
18
27
1.98
7090--7175
30
2.9
30
91
0
145
22
25
20
31
1.98
8014--8117
33
3.2
33
79
5
102
25
11
22
41
1.87
10590--10626
17
2.2
17
90
0
56
29
13
35
21
1.92
14894--15041
72
2.1
72
97
0
278
40
11
14
33
1.82
15013--15449
217
2.0
217
98
0
838
42
15
15
27
1.87
15395--15471
28
2.8
28
84
7
102
42
25
14
16
1.86
17178--17246
32
2.2
32
89
0
102
13
36
37
13
1.83
17581--17715
27
5.0
27
80
1
155
19
22
33
25
1.97
17886--17921
14
2.6
14
91
4
56
41
0
8
50
1.33
19831--19855
10
2.5
10
100
0
50
48
20
8
24
1.76
20762--20795
12
2.7
13
90
4
52
20
5
8
64
1.43
24480--24542
21
3.0
21
70
23
60
7
52
28
11
1.65
27884--27917
12
2.7
13
90
4
52
20
5
8
64
1.43
27914--27940
6
4.5
6
100
0
54
29
0
14
55
1.40
29330--29373
21
2.1
21
91
8
72
38
9
31
20
1.84
29709--29738
6
5.0
6
95
0
51
30
3
16
50
1.62

Tables:   1

The End!