Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006838.1 Corchorus capsularis cultivar CVL-1 contig06859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20995

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1517--1623
33
3.2
32
79
7
108
24
36
28
10
1.88
3739--4192
198
2.3
201
84
2
612
26
22
15
36
1.94
3840--4661
64
12.8
64
76
9
526
26
23
15
35
1.94
3840--4530
261
2.7
260
82
7
791
26
22
15
35
1.94
4112--4469
197
1.8
196
84
5
490
25
22
15
36
1.94
4293--4637
62
5.5
62
76
11
276
26
25
14
33
1.94
4296--4714
124
3.3
123
81
7
416
27
25
14
33
1.94
4424--4713
62
4.6
62
75
10
180
27
25
14
32
1.94
6826--6927
42
2.4
42
86
3
134
21
40
29
8
1.83
8616--8918
155
1.9
156
90
2
484
31
15
19
33
1.93
9522--9563
18
2.2
18
87
8
57
11
0
16
71
1.14
13225--13292
35
1.9
35
96
0
127
38
25
4
32
1.76
13699--13759
26
2.2
28
88
5
90
29
27
22
19
1.98
14637--14696
30
2.0
30
93
0
102
20
28
20
31
1.97
14637--14716
30
2.7
30
86
0
88
18
25
21
35
1.96

Tables:   1

The End!