Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006844.1 Corchorus capsularis cultivar CVL-1 contig06865, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31489

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2322--2402
33
2.5
30
80
9
90
23
41
25
8
1.83
8165--8343
76
2.4
76
95
0
313
17
30
27
24
1.97
9373--9435
2
31.5
2
96
0
117
0
0
49
50
1.00
10897--10983
22
4.0
21
78
7
95
22
17
29
29
1.97
12007--12035
2
14.5
2
100
0
58
0
0
51
48
1.00
16938--16979
21
2.1
20
91
8
68
30
0
9
59
1.29
16946--16985
21
1.9
21
89
0
62
37
0
10
52
1.35
16989--17035
21
2.4
20
83
13
62
25
6
2
65
1.27
17347--17448
31
3.3
31
94
2
177
6
13
38
41
1.72
17347--17448
16
6.5
16
92
3
154
6
13
38
41
1.72
17347--17448
47
2.2
47
94
3
179
6
13
38
41
1.72
17441--17495
23
2.4
23
87
0
83
1
20
47
30
1.60
17442--17493
17
3.1
17
75
8
52
1
21
50
26
1.59
18238--18327
6
15.5
6
68
26
52
3
15
50
31
1.61
18239--18281
22
1.9
23
90
4
70
2
13
51
32
1.54
18270--18313
16
2.8
16
89
6
63
4
15
43
36
1.68
24631--24690
15
3.9
15
78
6
59
36
0
1
61
1.06
25324--25384
20
2.9
22
76
18
74
24
19
4
50
1.67
25336--25561
34
6.2
34
73
19
163
19
23
3
53
1.61
25373--25555
41
4.8
39
77
17
147
18
24
2
54
1.57
25402--25481
20
4.0
20
77
6
81
21
25
2
51
1.60
25359--25561
75
2.7
74
82
7
232
19
23
2
53
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25576--25775
21
9.5
21
82
3
224
22
22
6
49
1.72
25632--25779
63
2.3
63
95
1
260
22
20
4
51
1.66
30905--30932
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!