Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006849.1 Corchorus capsularis cultivar CVL-1 contig06870, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28521

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2856--2965
58
1.9
58
96
0
202
43
12
22
20
1.86
6166--6190
13
1.9
13
100
0
50
56
20
8
16
1.65
14235--14469
104
2.3
104
87
0
344
32
17
18
31
1.94
19994--20102
54
2.0
54
100
0
218
22
12
30
34
1.91
23402--23520
36
3.4
35
80
17
149
28
15
7
47
1.73
23423--23535
32
3.4
32
78
17
131
28
17
6
47
1.72
23402--23530
68
1.9
68
88
6
199
28
15
6
48
1.71
23569--23629
21
3.2
21
62
33
55
22
27
11
37
1.89
23554--23840
36
8.1
34
82
7
297
25
22
9
42
1.83
23559--23833
71
3.9
70
83
6
347
26
22
9
42
1.83
23557--23840
106
2.7
105
88
3
408
25
22
9
42
1.83
23835--23963
22
5.6
22
73
12
98
21
16
10
51
1.73
23924--23977
22
2.5
22
87
0
72
12
18
11
57
1.64
23924--23981
11
5.3
11
79
8
64
12
18
10
58
1.61
26955--27130
87
2.0
88
94
3
311
27
23
24
25
2.00

Tables:   1

The End!